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AT5G01250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.725
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha 1,4-glycosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha 1,4-glycosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi stack; CONTAINS InterPro DOMAIN/s: Alpha 1,4-glycosyltransferase conserved region (InterPro:IPR007652), Glycosyltransferase, DXD sugar-binding region (InterPro:IPR007577); BEST Arabidopsis thaliana protein match is: alpha 1,4-glycosyltransferase family protein (TAIR:AT3G09020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
CAZy:GT32eggNOG:ENOG4111PD8eggNOG:KOG1928EMBL:AK229418
EMBL:AL137189EMBL:BT015324EMBL:CP002688EnsemblPlants:AT5G01250
EnsemblPlants:AT5G01250.1entrez:831833GeneID:831833GO:GO:0016021
GO:GO:0016740Gramene:AT5G01250.1hmmpanther:PTHR12042hmmpanther:PTHR12042:SF18
HOGENOM:HOG000030686InterPro:IPR007577InterPro:IPR007652InterPro:IPR029044
KEGG:ath:AT5G01250OMA:EQGSAMWPfam:PF04488Pfam:PF04572
PhylomeDB:Q9LFB1PIR:T45965Proteomes:UP000006548RefSeq:NP_195745.1
SUPFAM:SSF53448TAIR:AT5G01250TMHMM:TMhelixUniGene:At.33919
UniGene:At.74248UniProt:Q9LFB1
Coordinates (TAIR10) chr5:-:102370..103593
Molecular Weight (calculated) 46398.10 Da
IEP (calculated) 9.64
GRAVY (calculated) -0.17
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRHDIEKRF TVVIDNRRLN QSGSSSLFTA FAISFVTLIV VTTFTLISNF SMQPHRDFSG VKIEIKRVIP HLPLSSEREG ERSDLLKQQT QVNEKLQVIE
101: VFSGDNLSDK FQKRVNEFVG DGCEVNFVMT WISPADFFGN REVLAIESVF KSHPYGCLMI LSATMDSPQG YATLKPFIDR GYKVLAVTPD LPFLLKGTAG
201: ELWLDEIKSG KRDPGKISLA QNLSNLMRLA YLYKYGGVYL DTDMIVLKSF KGLRNVIGAQ TLDPSSTNWT RLNNAVLIFD KNHPLLLKFM EEFAKTFNGN
301: IWGYNGPYLV SRVARAVEGS SGYNFTVMRP SVFYSVNWLE IKKLFKVPKT EKDSKWVKTK LLHMQRNGYG LHLWNKFSRK YEIEQGSAMW KLVSEHCIIC
401: EISSVSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)