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AT1G09740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.873
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Adenine nucleotide alpha hydrolases-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 5950 Blast hits to 5719 proteins in 1218 species: Archae - 487; Bacteria - 4382; Metazoa - 139; Fungi - 81; Plants - 701; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0589eggNOG:ENOG410IW71EMBL:AK228228EMBL:BT005843
EMBL:CP002684EnsemblPlants:AT1G09740EnsemblPlants:AT1G09740.1entrez:837502
Gene3D:3.40.50.620GeneID:837502GO:GO:0006950GO:GO:0016787
Gramene:AT1G09740.1hmmpanther:PTHR31964hmmpanther:PTHR31964:SF2InterPro:IPR006015
InterPro:IPR006016InterPro:IPR014729KEGG:ath:AT1G09740OMA:HQKRITD
Pfam:PF00582PhylomeDB:Q84TF6PRINTS:PR01438Proteomes:UP000006548
RefSeq:NP_172445.2SMR:Q84TF6STRING:3702.AT1G09740.1SUPFAM:SSF52402
TAIR:AT1G09740UniGene:At.21292UniProt:Q84TF6
Coordinates (TAIR10) chr1:+:3154603..3155834
Molecular Weight (calculated) 18150.70 Da
IEP (calculated) 6.50
GRAVY (calculated) 0.10
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVSGSLNCV VVAVDGSEVS MEALRWALDN LKLSSSSSDS SFVVLHVQPS PSVAAGVSPG TIPFGGPSGL EVPAFTAAIE QHQKRITDTI LEHASQICAE
101: KSVNVKTQVV IGDPKYKICE AVENLHADLL VMGSRAYGRI KRMFLGSVSN YCTNHAHCPV VIIKPKEDSS A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)