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AT5G01230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: FtsJ-like methyltransferase family protein (TAIR:AT4G25730.1); Has 5711 Blast hits to 5669 proteins in 1418 species: Archae - 154; Bacteria - 2315; Metazoa - 596; Fungi - 413; Plants - 124; Viruses - 65; Other Eukaryotes - 2044 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-652-MONOMEREC:2.1.1.205eggNOG:COG0293eggNOG:KOG1099
EMBL:BT002330EMBL:CP002688EnsemblPlants:AT5G01230EnsemblPlants:AT5G01230.1
entrez:830268ExpressionAtlas:Q8GUN8Gene3D:3.40.50.150GeneID:830268
GO:GO:0002128GO:GO:0002181GO:GO:0005634GO:GO:0005737
GO:GO:0008175GO:GO:0030488GO:GO:0042742GO:GO:0051301
Gramene:AT5G01230.1HAMAP:MF_01547HAMAP:MF_03162hmmpanther:PTHR10920
hmmpanther:PTHR10920:SF12InterPro:IPR002877InterPro:IPR015507InterPro:IPR028590
InterPro:IPR029063OMA:FIVCLNFPANTHER:PTHR10920Pfam:PF01728
PhylomeDB:Q8GUN8Proteomes:UP000006548RefSeq:NP_851026.1SMR:Q8GUN8
STRING:3702.AT5G01230.1SUPFAM:SSF53335TAIR:AT5G01230UniGene:At.26557
UniProt:Q8GUN8
Coordinates (TAIR10) chr5:-:92789..95380
Molecular Weight (calculated) 33996.50 Da
IEP (calculated) 6.15
GRAVY (calculated) -0.27
Length 309 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKASRDKRD IYYRKAKEEG WRARSAFKLL QIDEEFNIFE GVKRVVDLCA APGSWSQVLS RQLYLPAKSS AESKDGDLPL IVAIDLQPMA PIEGVIQVQG
101: DITNARTAEV VIRHFDGCKA DLVVCDGAPD VTGLHDMDEF VQSQLILAGL TIVTHILKEG GKFIAKIFRG KDTSLLYCQL KLFFPTVTFA KPKSSRNSSI
201: EAFAVCENYS PPEGFNPRDL HRLLEKVGSP SGGSDLDCSS GWLEGPNKVY IPFLACGDLT GYDSDRSYPL PREADGSSYQ SLDPIQPPIA PPYKRALELK
301: KASAQSFNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)