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AT3G18940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : clast3-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
clast3-related; CONTAINS InterPro DOMAIN/s: Proteasome assembly chaperone 2, eukaryotic (InterPro:IPR016562), Proteasome assembly chaperone 2 (InterPro:IPR019151); Has 249 Blast hits to 248 proteins in 114 species: Archae - 1; Bacteria - 0; Metazoa - 124; Fungi - 51; Plants - 58; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
DNASU:821426eggNOG:ENOG410XRHJeggNOG:KOG3112EMBL:AP000735
EMBL:BT024704EMBL:CP002686EnsemblPlants:AT3G18940EnsemblPlants:AT3G18940.1
entrez:821426GeneID:821426Gramene:AT3G18940.1hmmpanther:PTHR12970
InterPro:IPR016562InterPro:IPR019151KEGG:ath:AT3G18940KO:K11876
OMA:MTINDYYPfam:PF09754PhylomeDB:Q9LJ72PIRSF:PIRSF010044
Proteomes:UP000006548RefSeq:NP_566621.1STRING:3702.AT3G18940.1SUPFAM:0054480
TAIR:AT3G18940UniGene:At.20663UniProt:Q9LJ72
Coordinates (TAIR10) chr3:-:6527081..6529050
Molecular Weight (calculated) 30914.70 Da
IEP (calculated) 4.31
GRAVY (calculated) -0.14
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFVVEEGKL VNEDCSTLVL PALSIGNVGQ LAVDLLVSST GAERVGYLDD PNLLPCVGND AYGPLPCGEI ALPLEVYESS SIATTLAQQR SPVAKGMMIK
101: FAENIANFAA SSGKKHIIVL SSLDFQRLHN LDMSRGPQVY YLSNAESDGR DDHCERLGFG RLHEYDSEGR CWKYLSSVFE KNSVEELALP SEDELEDIDY
201: YPSLPFAALF SAFKARGLKM TCLLCYCSEG DNIPEAFLLA EASSKLMGLT PDKFHGEEGG KWQIPYSWKS MYGAPPDMSM F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)