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AT4G40070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.417
plasma membrane 0.277
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 9770 Blast hits to 9744 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 2524; Fungi - 782; Plants - 4953; Viruses - 74; Other Eukaryotes - 1437 (source: NCBI BLink).
Protein Annotations
BioGrid:15450eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AF419600
EMBL:AL035708EMBL:AL161596EMBL:BT000540EMBL:CP002687
EnsemblPlants:AT4G40070EnsemblPlants:AT4G40070.1entrez:830170Gene3D:3.30.40.10
GeneID:830170Genevisible:Q8W571GO:GO:0008270GO:GO:0016021
GO:GO:0016567Gramene:AT4G40070.1hmmpanther:PTHR14155HOGENOM:HOG000239182
InParanoid:Q8W571InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT4G40070
MINT:MINT-8066333OMA:CRSGEESPaxDb:Q8W571Pfam:PF13639
Pfam:Q8W571Pfscan:PS50089PhylomeDB:Q8W571PIR:H85474
PIR:T06113PRIDE:Q8W571PRO:PR:Q8W571PROSITE:PS50089
ProteinModelPortal:Q8W571Proteomes:UP000006548RefSeq:NP_568080.2SMART:SM00184
SMR:Q8W571STRING:3702.AT4G40070.1SUPFAM:SSF57850TAIR:AT4G40070
TMHMM:TMhelixUniGene:At.27385UniPathway:UPA00143UniProt:Q8W571
Coordinates (TAIR10) chr4:+:18576533..18577504
Molecular Weight (calculated) 36071.70 Da
IEP (calculated) 8.81
GRAVY (calculated) -0.43
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MMTRVECFNP HRWIILHVAI IIQSKANAQS FSPSPPDLQT GHTPSKTTVF AVLVTLFFLT GLLSVYIRHC ARSNPDSSTR YFRNRANDGS SRRGGLDNAV
101: VESFPVFAYS SVKESKIGSK DLECAICLNE LEDHETVRLL PICNHLFHID CIDTWLYSHA TCPVCRSNLT AKSNKPGDED DGVPLAAMRD HVVVDIETVE
201: VAKSHHRRLS SEISGKFPRS NSTGHSMDRF SDGTERFTLR LPDDVKMRLM AVKGRRLKRT RSFDVDLTAE HYCRSGEESS NTIGSGAKSG RVNWPDRWGL
301: TLFVSKSNSG SVRSQKSNGE PLK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)