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AT4G39180.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae
Computational
Description (TAIR10)
SECRETION 14 (SEC14); FUNCTIONS IN: phosphatidylinositol transporter activity; INVOLVED IN: phosphatidylcholine biosynthetic process; LOCATED IN: intracellular; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14-like 3 (TAIR:AT2G21540.3); Has 2899 Blast hits to 2883 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 924; Fungi - 653; Plants - 892; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AL050351EMBL:AL161594
EMBL:CP002687EnsemblPlants:AT4G39180EnsemblPlants:AT4G39180.1entrez:830073
ExpressionAtlas:F4JVA9Gene3D:3.40.525.10GeneID:830073Genevisible:F4JVA9
GO:GO:0000139GO:GO:0005215GO:GO:0005886GO:GO:0006656
GO:GO:0015031hmmpanther:PTHR23324hmmpanther:PTHR23324:SF71HOGENOM:HOG000196557
InParanoid:F4JVA9InterPro:IPR001071InterPro:IPR001251InterPro:IPR011074
ncoils:CoilOMA:CKSMEAQPaxDb:F4JVA9Pfam:F4JVA9
Pfam:PF00650Pfam:PF03765Pfscan:PS50191PIR:T08566
PRIDE:F4JVA9PRINTS:PR00180PRO:PR:F4JVA9PROSITE:PS50191
ProteinModelPortal:F4JVA9Proteomes:UP000006548RefSeq:NP_195629.2SMART:SM00516
SMART:SM01100SMR:F4JVA9STRING:3702.AT4G39180.1SUPFAM:SSF46938
SUPFAM:SSF52087TAIR:AT4G39180tair10-symbols:ATSEC14tair10-symbols:SEC14
TMHMM:TMhelixUniGene:At.19181UniGene:At.31113UniProt:F4JVA9
Coordinates (TAIR10) chr4:-:18244006..18246673
Molecular Weight (calculated) 63863.20 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.59
Length 554 amino acids
Sequence (TAIR10)
(BLAST)
001: MADTMVAHMD RHNKIDVEIS EDDKRLTKLC SLKKKAINAT NKFKHSMTKK GRRHSRVACV SIVDEIDTEE LQAVDAFRQA LILDELLPSK HDDHHMMLRF
101: LRARKFDLEK AKQMWSDMLN WRKEYGADTI MEDFDFKEIE EVVKYYPQGY HGVDKEGRPI YIERLGQVDA TKLMKVTTID RYVKYHVKEF EKTFNVKFPA
201: CSIAAKRHID QSTTILDVQG VGLSNFNKAA KDLLQSIQKI DNDNYPETLN RMFIINAGCG FRLLWNTVKS FLDPKTTAKI HVLGNKYQTK LLEIIDANEL
301: PEFLGGKCTC ADKGGCMRSD KGPWNDPEIF KLVQNGEGRC LRRSLSGIEE KTIFEYNNET KKKCEPEETH KQSAAEMEKK FIDTNVDAAA AADWPTKLNK
401: AEKNPTDLKD VYSAVNPLER KGYLYGSVMA LLMGIVGVMR LTKNMPRRLT EANVYSREGS AVYQDGVTVM SKQEYIAMVK KITDLEEKCK SMEAQAAFYM
501: EREKTLDAAL RRIDQLELQL SETNKALDET MTRQHEIMAF IEKKKKKKRK FLLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)