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AT4G39010.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyl hydrolase 9B18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyl hydrolase 9B18 (GH9B18); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B17 (TAIR:AT4G39000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G39010-MONOMERCAZy:GH9EC:3.2.1.4eggNOG:ENOG410IJ4G
eggNOG:ENOG410YC2HEMBL:AL035679EMBL:AL161594EMBL:AY059825
EMBL:BT002204EMBL:CP002687EnsemblPlants:AT4G39010EnsemblPlants:AT4G39010.1
entrez:830056Gene3D:1.50.10.10GeneID:830056Genevisible:Q93YQ7
GO:GO:0005576GO:GO:0008810GO:GO:0030245GO:GO:0071555
Gramene:AT4G39010.1gramene_pathway:3.2.1.4gramene_pathway:PWY-1001hmmpanther:PTHR22298
hmmpanther:PTHR22298:SF29HOGENOM:HOG000021033InParanoid:Q93YQ7InterPro:IPR001701
InterPro:IPR008928InterPro:IPR012341InterPro:IPR018221InterPro:IPR033126
KEGG:00500+3.2.1.4KEGG:ath:AT4G39010KO:K01179OMA:RDGVCPF
PaxDb:Q93YQ7Pfam:PF00759Pfam:Q93YQ7PhylomeDB:Q93YQ7
PIR:T06061PRIDE:Q93YQ7PRO:PR:Q93YQ7PROSITE:PS00592
PROSITE:PS00698ProteinModelPortal:Q93YQ7Proteomes:UP000006548RefSeq:NP_568050.1
scanprosite:PS00592scanprosite:PS00698SMR:Q93YQ7STRING:3702.AT4G39010.1
SUPFAM:SSF48208TAIR:AT4G39010tair10-symbols:AtGH9B18tair10-symbols:GH9B18
UniGene:At.26609UniGene:At.67360UniProt:Q93YQ7
Coordinates (TAIR10) chr4:-:18176162..18179102
Molecular Weight (calculated) 55497.90 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.32
Length 497 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLHLHPLSL VFFFFFFFFR PTMSSNQHDY SDALSKSILF FEGQRSGYLP NDQRMTWRRN SGLSDGWTHN IDLTGGYYDA GDNVKFNFPM AFTTTMLAWS
101: VIEFGEFMPS SELRNSLVAL RWSSNYLLKS VSQLPNRIFV QVGDPIADHN CWERPEDMDT PRTAYAVNAP NPASEVAGET TAALSAASIA FRSSDPGYSQ
201: TLLQNAVKTF QFADMYRGAY SSNDDIKNDV CPFYCDFNGF QDELLWGAAW LRKATGDESY LNYIESNREP FGANDNVDEF GWDNKVGGLN VLVSKEVIEG
301: NMYNLEAYKA SAESFMCSLV PESSGPHVEY TSAGLLYKPG GSQLQHATTI SFLLLVYAQY LSRSSLSLNC GTLTVPPDYL RRLAKKQVDY ILGNNPMGLS
401: YMVGYGERYP KRIHHRGSSL PSIVDHPEAI RCKDGSVYFN STEPNPNVLI GAVVGGPGED DMYDDDRSDF RKSEPTTYIN APFVGVLAYF AANPGSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)