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AT4G38950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20061580 (2010): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP binding microtubule motor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based process, microtubule-based movement; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3490 (InterPro:IPR021881), Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT2G21300.2); Has 9938 Blast hits to 9516 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 4372; Fungi - 1331; Plants - 1857; Viruses - 0; Other Eukaryotes - 2378 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5059eggNOG:KOG0242EMBL:CP002687EnsemblPlants:AT4G38950
EnsemblPlants:AT4G38950.1EnsemblPlants:AT4G38950.2entrez:830050Gene3D:3.40.850.10
GeneID:830050GO:GO:0003777GO:GO:0005524GO:GO:0005874
GO:GO:0007018GO:GO:0009506Gramene:AT4G38950.1Gramene:AT4G38950.2
hmmpanther:PTHR24115hmmpanther:PTHR24115:SF405InterPro:IPR001752InterPro:IPR019821
InterPro:IPR021881InterPro:IPR027417InterPro:IPR027640KEGG:ath:AT4G38950
KO:K11498ncoils:CoilOMA:PRANDSVPANTHER:PTHR24115
Pfam:PF00225Pfam:PF11995Pfscan:PS50067PRINTS:PR00380
PROSITE:PS00411PROSITE:PS50067Proteomes:UP000006548RefSeq:NP_001119143.1
RefSeq:NP_195606.2scanprosite:PS00411SMART:SM00129SMR:F4JUI9
STRING:3702.AT4G38950.1SUPFAM:SSF52540TAIR:AT4G38950UniGene:At.31131
UniProt:F4JUI9
Coordinates (TAIR10) chr4:-:18154606..18158461
Molecular Weight (calculated) 94469.00 Da
IEP (calculated) 7.49
GRAVY (calculated) -0.59
Length 836 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKTQMPVAR EEKILVLVRL RPLNQKEIAA NEAADWECIN DTTILYRNTL REGSNFPSAY SFDKVYRGEC PTRQVYEDGT KEIALSVVKG INCSIFAYGQ
101: TSSGKTYTMT GITEFAVADI FDYIFQHEER AFSVKFSAIE IYNEAIRDLL SSDGTSLRLR DDPEKGTVVE KATEETLRDW NHLKELLSIC EAQRKIGETS
201: LNERSSRSHQ MIRLTVESSA REFLGKENST TLMASVNFID LAGSERASQA MSAGTRLKEG CHINRSLLTL GTVIRKLSKG RQGHINFRDS KLTRILQPCL
301: GGNARTAIIC TLSPARSHVE LTKNTLLFAC CAKEVTTKAR INVVMSDKAL LKQLQRELAR LETELRNPAS SPASNCDCAM TVRKKDLQIQ KMEKEIAELR
401: KQRDLAQSRL EDFMRMIEHN VASKPGTPHF GNHTDKWEDG SVSETSGVVD SDRRSFISDG MSTPLSISRA YVHSHSDDDD LDEDLPRRSE DLSEEYCREV
501: QCIETEESVT VYNNKKDKRA EPENVLGCGE DANGETSVSQ NVRVRSWNRR ETVSGPSTPP ENIGTGFLGR PESHKIAFPD LEFGSTVSRN DSMSSCGSDS
601: TGTQSIRTPL GEEGGITSIR TFVEGLKEMA KRQGEVSNAE DSGKMRRDIG LDSMDREFER QRQEILELWQ TCNISLVHRT YFYLLFKGDE ADSIYIGVEL
701: RRLLFMKDSF SQGNQALEGG ETLTLASSRK ELHRERKMLS KLVGKRFSGE ERKRIYHKFG IAINSKRRRL QLVNELWSNP KDMTQVMESA DVVAKLVRFA
801: EQGRAMKEMF GLTFTPPSFL TTRRSHSWRK SMPALF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)