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AT4G38410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Dehydrin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dehydrin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); Has 3050 Blast hits to 2020 proteins in 252 species: Archae - 4; Bacteria - 32; Metazoa - 564; Fungi - 141; Plants - 1342; Viruses - 0; Other Eukaryotes - 967 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTG3eggNOG:ENOG41107VPEMBL:AK117923EMBL:BT003680
EMBL:CP002687EnsemblPlants:AT4G38410EnsemblPlants:AT4G38410.1entrez:829998
GeneID:829998GO:GO:0005829GO:GO:0006950GO:GO:0009415
Gramene:AT4G38410.1hmmpanther:PTHR33346HOGENOM:HOG000148329InterPro:IPR000167
InterPro:IPR030513KEGG:ath:AT4G38410ncoils:CoilOMA:AASKGCG
Pfam:PF00257PROSITE:PS00823Proteomes:UP000006548RefSeq:NP_195554.2
scanprosite:PS00823STRING:3702.AT4G38410.1TAIR:AT4G38410UniGene:At.31173
UniProt:Q8GY17
Coordinates (TAIR10) chr4:+:17981025..17981604
Molecular Weight (calculated) 18256.10 Da
IEP (calculated) 6.18
GRAVY (calculated) -1.63
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MADHPRSTEQ QEADAAASKG CGMFDFLKKK PEDVHSSENA RVTKEPKEEE KPSLAERFHL SDSSSSDEEA GENGEKKEKK KKKKKNEVAE DQCETEEKIP
101: AGIGHEDGKE KGFMEKIKDK LPGGHNGKPE AEPHNDKAKE KGFMEKIKEK LPGHTNDEKK KET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)