AT4G34540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NmrA-like negative transcriptional regulator family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: pinoresinol reductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NmrA-like negative transcriptional regulator family protein (TAIR:AT1G75280.1); Has 2050 Blast hits to 2046 proteins in 499 species: Archae - 10; Bacteria - 767; Metazoa - 6; Fungi - 470; Plants - 578; Viruses - 7; Other Eukaryotes - 212 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16500506..16501932 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34073.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.47 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 306 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEEKKKSRV LIIGATGRLG NYLTRFSIES GHPTFALIRN TTLSDKLKSL SDAGVTLLKG SLEDEGSLAE AVSKVDVVIS AIPSKHVLDQ KLLVRVIKQA 101: GSIKRFIPAE YGANPDKTQV SDLDHDFYSK KSEIRHMIES EGIPYTYICC GLFMRVLLPS LVQPGLQSPP TDKVTVFGDG NVKAVFVNDV DVAAFTIKTI 201: DDPRTLNKTL YLSPPGNICS MNDLVELWEG KIEKKLEKTF ATENQLLKKI KETPYPDNME MVFIYSVFIK GDHTYFDIES CGGVNGTELY PDVKYMTVSE 301: FLDTLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)