AT4G33565.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.990 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1); Has 9700 Blast hits to 9677 proteins in 303 species: Archae - 0; Bacteria - 6; Metazoa - 2357; Fungi - 776; Plants - 5096; Viruses - 103; Other Eukaryotes - 1362 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:16136821..16137924 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 42183.60 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.95 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||
Length | 367 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MIDTVNLLLL TKLDSKERKQ KRENKNEDNS HLLFSFFFLF LHCLLIDDLE ARIMRFLHRF LLEDMPKETF SDSLCKNNCI QELKTLGYCS SYCLDECPSI 101: CEIVVISGLS PPAEIHHDDN LKRILIISAS SIITTLFLLT LLVLCFKFYY RRRRSITTSR RWSMEEARNW DFDGPAPVIV DHPIWHIRTI GLNPTVISSI 201: KVCQYSKKDG VVEGTDCSVC LSEFEEEETL RLLPKCKHAF HLYCIDTWLR SHTNCPLCRA PIVEANTMID DHSEGLEEIS VMIPEENGDD TDEEIEEERD 301: GFVSNISRDH GESQQQRVRR SVSLDSLSGL RVSEVVVGRE KEKLKRGNNI GSGRSSLLKR SISYSGK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)