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AT4G33565.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72220.1); Has 9700 Blast hits to 9677 proteins in 303 species: Archae - 0; Bacteria - 6; Metazoa - 2357; Fungi - 776; Plants - 5096; Viruses - 103; Other Eukaryotes - 1362 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:CP002687EnsemblPlants:AT4G33565
EnsemblPlants:AT4G33565.1entrez:829496Gene3D:3.30.40.10GeneID:829496
GO:GO:0005886GO:GO:0008270GO:GO:0016021Gramene:AT4G33565.1
hmmpanther:PTHR14155hmmpanther:PTHR14155:SF94InParanoid:F4JJ02InterPro:IPR001841
InterPro:IPR013083iPTMnet:F4JJ02KEGG:ath:AT4G33565OMA:IWHIRTI
PaxDb:F4JJ02Pfam:PF13639Pfscan:PS50089PRIDE:F4JJ02
PROSITE:PS50089ProteinModelPortal:F4JJ02Proteomes:UP000006548RefSeq:NP_567926.4
SMART:SM00184SMR:F4JJ02STRING:3702.AT4G33565.1SUPFAM:SSF57850
TAIR:AT4G33565TMHMM:TMhelixUniGene:At.31572UniGene:At.75651
UniProt:F4JJ02
Coordinates (TAIR10) chr4:+:16136821..16137924
Molecular Weight (calculated) 42183.60 Da
IEP (calculated) 5.95
GRAVY (calculated) -0.30
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MIDTVNLLLL TKLDSKERKQ KRENKNEDNS HLLFSFFFLF LHCLLIDDLE ARIMRFLHRF LLEDMPKETF SDSLCKNNCI QELKTLGYCS SYCLDECPSI
101: CEIVVISGLS PPAEIHHDDN LKRILIISAS SIITTLFLLT LLVLCFKFYY RRRRSITTSR RWSMEEARNW DFDGPAPVIV DHPIWHIRTI GLNPTVISSI
201: KVCQYSKKDG VVEGTDCSVC LSEFEEEETL RLLPKCKHAF HLYCIDTWLR SHTNCPLCRA PIVEANTMID DHSEGLEEIS VMIPEENGDD TDEEIEEERD
301: GFVSNISRDH GESQQQRVRR SVSLDSLSGL RVSEVVVGRE KEKLKRGNNI GSGRSSLLKR SISYSGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)