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AT4G25690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25670.2); Has 73 Blast hits to 60 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AK317206EMBL:AL050400EMBL:AL161563EMBL:AY065035
EMBL:BT015913EMBL:CP002687EnsemblPlants:AT4G25690EnsemblPlants:AT4G25690.1
EnsemblPlants:AT4G25690.2entrez:828674GeneID:828674Gramene:AT4G25690.1
Gramene:AT4G25690.2hmmpanther:PTHR34212hmmpanther:PTHR34212:SF1HOGENOM:HOG000241642
KEGG:ath:AT4G25690ncoils:CoilOMA:FRGERTNPhylomeDB:Q9SZZ7
PIR:T09561Proteomes:UP000006548RefSeq:NP_194299.1RefSeq:NP_974617.1
STRING:3702.AT4G25690.1TAIR:AT4G25690UniGene:At.28280UniProt:Q9SZZ7
Coordinates (TAIR10) chr4:-:13090421..13090996
Molecular Weight (calculated) 21429.30 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.59
Length 191 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHTLCKQVV QPVTRKVKKH GKDEFDRIKQ AEKKKRRLEK ALATSAAIRA ELEKKKQKRL EEQQRLDEEG AAIAEAVALH VLLGEDSDDS SRVKFGEETG
101: FGMDLFRDER TNYVPRQSCA SYAVQGIGFV SNGYGLGDSN WSVSYKPFMK DVWDNNMVIS ADLIAAQAVS SLQISEDADR NAYVFETMFG G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)