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AT4G33160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.812
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G27340.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGGYeggNOG:ENOG410YB55EMBL:AL035525EMBL:AL161583
EMBL:BT029208EMBL:BX828112EMBL:CP002687EnsemblPlants:AT4G33160
EnsemblPlants:AT4G33160.1entrez:829453Gene3D:2.130.10.80GeneID:829453
Genevisible:Q9SMZ3Gramene:AT4G33160.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF124
HOGENOM:HOG000240122InParanoid:Q9SMZ3InterPro:IPR001810InterPro:IPR011043
InterPro:IPR015916KEGG:ath:AT4G33160OMA:KCFKDGEPaxDb:Q9SMZ3
Pfam:PF00646Pfam:Q9SMZ3Pfscan:PS50181PIR:T05196
PRO:PR:Q9SMZ3PROSITE:PS50181ProteinModelPortal:Q9SMZ3Proteomes:UP000006548
RefSeq:NP_567915.3SMART:SM00256STRING:3702.AT4G33160.1SUPFAM:0047741
SUPFAM:SSF50965SUPFAM:SSF81383TAIR:AT4G33160UniGene:At.43589
UniProt:Q9SMZ3
Coordinates (TAIR10) chr4:+:15994160..15995533
Molecular Weight (calculated) 51666.80 Da
IEP (calculated) 4.85
GRAVY (calculated) -0.29
Length 457 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)