AT4G32920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : glycine-rich protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:15888153..15896006 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 153998.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.82 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||
| Length | 1432 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MISISIPMVR FCLCFAFVIL VSANPKLINS WDETAIRFEP LSPSPAPEPS PDDDDSSVSC VDDLGGVGSL DSTCKLVADL NLTRDLNITG KGNLHVLPGV 0101: RLVCQFPGCS ISVNISGNFS LAENSSVIAG TFRLAAENAE FGLSSAVDTT GLAGEPPPDT SGTPEGVEGA GGGYGGRGAC CLSDTTTKIP EDVFGGDVYG 0201: WSSLEKPEIY GSRGGSTSNE VDYGGGGGGT VAIEILGYIS LNGSVLADGA SGGVKGGGGS GGSIFVMAHK MAGNGRLSAS GGDGYAGGGG GRVSVDIYSR 0301: HSDPKIFFNG GRSFGCPENA GAAGTLYDVI SESLTIDNHN KTTYTDTLLL EFPNHRLFTN LYIRNMAKVA VPLRWSRVQV QGLISLSNGG ELNFGLPRYA 0401: SSEFELFAEE LLMSNSAIKV YGALRMTVKV FLMLKSRMFI DGGGVTILGT SMLEISNLLV LKESSVIQSN GNLGVHGQGL LNLTGTGDTI EAQRLILSLF 0501: YSIQVGAGAV LRGPLQNAST GGLTPKLYCQ RQDCPVELLH PPEDCNVNSS LPFTLQICRV EDITVEGLIK GSVIQFHLAR TVLVRSSGTI SADGMGCKGG 0601: VGTGRFLRSG IGSGGGHGGK GGSGCYNHTC IEGGESYGNA DLPCELGSGS GNEESTDSVA GGGIIVLGSL EHPLSSLSLE GSITTDGESP RKTLKGLSNS 0701: SLGPGGGSGG TVLLFLRTLE IGRSAILSSI GGNGSLKGGG GGSGGRIHFH WSDIPTGDVY HPVAIVKGRV YVRGGMGIIE DNIGGNGTLT GKACPEGLYG 0801: LFCEECPSGT YKNVTGSDKA LCHLCPANDI PHRAVYVTVR GGVAETPCPY KCISDRYHMP HCYTTLEELI YTFGGPWLFG VLLVVVLLLL ALVFSVARMK 0901: FVSGDELHGS APTQHGSQID HSFPFLESLN EVMETSRVEE SQGHMHRIYF LGPNTFSEPW HLSHTPPEEI KEIVYEAAFN GFVDEVNVIA AYQWWEGAIY 1001: IMLSVLVYPL AWSWQQSRRR LKFQKLRDFV RSEYDHSCLR SCRSRALYEG LKVAATPDLM LAHLDFFLGG DEKRSDLPPQ VHQRLPMPLI FGGDGSYMAY 1101: YSLQSDDILT SLLSQLVPPT TWYRFVAGLN AQLRLVQQGK LRSTFRSVMR WIETHGNPAL KRHGVRVDLA RFQALSSSSC QYGILVHTIA DEVASTRSDD 1201: ETEQQHPWGT QIENHSGDFR ENFQPLRSEI NHVRHQECGE IIDIGSLQFL KEEKDVLSLI SFLIHNTKPV GHQDLVGLVI SVLLLGDLTL TLLTLLQLYS 1301: ISLLEVFLAM FILPLSIIFP FPAGVSALFS HGPRRSASRT RVYALWNVTS LVNVVVAFVC GYVHYHGSSS GKKIPYLQPW NISMDENEWW IFPVALFLCK 1401: VLQSQLVNWH VANLEIQDYS LYSDDSELFW QS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)