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AT5G58160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31948069 (2020): endoplasmic reticulum
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Actin-binding FH2 (InterPro:IPR015425), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (Formin Homology) protein (TAIR:AT2G25050.1); Has 66030 Blast hits to 44960 proteins in 1807 species: Archae - 80; Bacteria - 11670; Metazoa - 27723; Fungi - 9802; Plants - 6854; Viruses - 1874; Other Eukaryotes - 8027 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G58160EnsemblPlants:AT5G58160.1entrez:835928hmmpanther:PTHR23213
hmmpanther:PTHR23213:SF232ncoils:CoilPfam:PF02181Pfam:PF10409
Pfscan:PS51182Pfscan:PS51444SUPFAM:SSF101447
Coordinates (TAIR10) chr5:+:23533724..23539465
Molecular Weight (calculated) 146477.00 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.39
Length 1324 amino acids
Sequence (TAIR10)
(BLAST)
0001: MALFRKLFYR KPPDGLLEIC DRVFVFDCCF STDSWEEENY KVYMAGVVNQ LQEHFPEASS LVFNFREVGT RSVMADVLSE HGLTIMDYPR HYEGCSLLPV
0101: EVMHHFLRSS ESWLSLGPNN LLLMHCESGA WPVLAFMLAA LLIYRKQYSG ESKTLDMIYK QAPRELLRLF SPLNPIPSQL RYLQYVSRRN LVSEWPPLDR
0201: ALTMDCVILR FIPDVSGQGG FRPMFRIYGQ DPFFVDDKKP KLLYTTPKKG KHLRVYKQAE CELVKIDINC HVQGDIVIEC LSLNDDMERE VMMFRVVFNT
0301: AFIRSNILML NRDEVDTLWH IKEFPKGFRV ELLFSDMDAA SSVDLMNFSS LEEKDGLPIE VFSKVHEFFN QVDWVDQTDA TRNMFQQLAI ANAVQEGLDG
0401: NSSPRLQGLS PKSIHDIMKH AAIENSAKFK LSSMSEVETI DTPEKPPTDS VKKFIAEDVH SVLQINNQEQ NASEDATKLL HQESPSLKLV HHSATVKPLV
0501: DDSKSPENAE ENFPKSPSAH DGKAISFSPP TPSPPHPVRP QLAQAGAPPP PPPLPAAASK PSEQLQHSVV QATEPLSQGN SWMSLAGSTF QTVPNEKNLI
0601: TLPPTPPLAS TSHASPEPSS KTTNSLLLSP QASPATPTNP SKTVSVDFFG AATSPHLGAS DNVASNLGQP ARSPPPISNS DKKPALPRPP PPPPPPPMQH
0701: STVTKVPPPP PPAPPAPPTP IVHTSSPPPP PPPPPPPAPP TPQSNGISAM KSSPPAPPAP PRLPTHSASP PPPTAPPPPP LGQTRAPSAP PPPPPKLGTK
0801: LSPSGPNVPP TPALPTGPLS SGKGRMLRVN LKNSPAKKLK PYHWLKLTRA VNGSLWAETQ MSSEASKYAL FILLSLISLM PPDSCMISNS LILYLLVRAP
0901: DIDMTELESL FSASAPEQAG KSRLDSSRGP KPEKVQLIEH RRAYNCEIML SKVKVPLQDL TNSVLNLEES ALDADQVENL IKFCPTREEM ELLKGYTGDK
1001: DKLGKCELFF LEMMKVPRVE TKLRVFSFKM QFTSQISELR NSLGVVNSAA EQVKNSEKFK RIMQTILSLG NALNQGTARG AAVGFKLDSL PKLSETRARN
1101: NRMTLMHYLC KVSFYSLRFC SFVDVLEEER YSLMDSLQIL AEKIPEVLDF TKELSSLEPA TKIQLKFLAE EMQAINKGLE KVVQELSLSE NDGPISHNFN
1201: KILKEFLHYA EAEVRSLASL YSGVGRNVDG LILYFGEDPA KCPFEQVVST LLNFVRLFNR AHEENGKQLE AEAKKNAAEK EKPKTGGLDT EIKKPLNEEV
1301: KEEKTKTSGL GKEMSDRLKE RTAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)