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AT4G31620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transcriptional factor B3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31615.1); Has 320 Blast hits to 174 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX38eggNOG:ENOG41104C4EMBL:AL031004EMBL:AL161579
EMBL:AY063930EMBL:AY133753EMBL:CP002687EnsemblPlants:AT4G31620
EnsemblPlants:AT4G31620.1entrez:829290Gene3D:2.40.330.10GeneID:829290
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT4G31620.1hmmpanther:PTHR31674hmmpanther:PTHR31674:SF5HOGENOM:HOG000154088
InParanoid:Q8VZQ9InterPro:IPR003340InterPro:IPR015300iPTMnet:Q8VZQ9
KEGG:ath:AT4G31620ncoils:CoilOMA:RRTHASHPaxDb:Q8VZQ9
Pfam:PF02362Pfam:Q8VZQ9Pfscan:PS50863PhylomeDB:Q8VZQ9
PIR:T05108PRIDE:Q8VZQ9PRO:PR:Q8VZQ9PROSITE:PS50863
ProteinModelPortal:Q8VZQ9Proteomes:UP000006548RefSeq:NP_194890.2SMART:SM01019
SMR:Q8VZQ9SUPFAM:SSF101936TAIR:AT4G31620UniGene:At.27141
UniProt:Q8VZQ9
Coordinates (TAIR10) chr4:-:15322759..15324658
Molecular Weight (calculated) 55715.10 Da
IEP (calculated) 10.04
GRAVY (calculated) -0.66
Length 492 amino acids
Sequence (TAIR10)
(BLAST)
001: MANHPLSSSR SNRPFFVRSL AGHTSNLIIP DEFFTAHLEG KTGLTKLKLT SDASDRIWDV RLNGRRFAGG WDDFSAAHCL RDDDVLVFRL DVKMVFHVTP
101: SGRSFSQIRT SSSSGDYDSD DDDDEAGDDD SDSKNISLKK KSRFEAESSS SEKYCLLGLT ASNLRLNRVS FTKHFSRANG LTKRCCMIDL MNLSGESWTL
201: GLRHNKRTGQ AFIRGRWRSF CHANELKPGS FYRFKLVRNG TRPLLQLCFK VIPQGNCSNS KANGKANVSE KYSREDGSAS TKQNKFLTVT LKHYMIQSGQ
301: LRLRRSFVRE NGIKEAEEII LVDKNGVEWP SYVSSSKQRR EFYMAHGWIR FCEANKLKTG ETFTLEFVRG EGTTPMLKFC SEAKIEQEEA PEERGTPLPK
401: RARVSAEVGH SRRTQAPNKS SDDPKILQRK QPLQPCSFSD QAKKVKQSIV NILTGIKRFR SELELKERNL EAALLEIDAL GDKVSEINKI LK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)