AT4G30710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Family of unknown function (DUF566) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Family of unknown function (DUF566) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT2G24070.2); Has 9171 Blast hits to 3934 proteins in 412 species: Archae - 0; Bacteria - 1377; Metazoa - 2513; Fungi - 1393; Plants - 533; Viruses - 49; Other Eukaryotes - 3306 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14965538..14967881 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69849.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.33 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||||||||||
| Length | 644 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDVATDTTRR RLLPSDKNNA VVATRRPRTM EVSSRYRSPT PTKNGRCPSP SVTRPTVSSS SQSVAAKRAV SAERKRPSTP PSPTSPSTPI RDLSIDLPAS 101: SRRLSTGRLP ESLWPSTMRS LSVSFQSDSV SVPVSKKERP VSSSSGDRTL RPSSNIAQKH KAETTSVSRK PTPERKRSPL KGKNNVSDLS ENSKPVDGPH 201: SRLIEQHRWP SRIGGKITSN SLNRSLDLGD KASRGIPTSG PGMGPSLRRM SLPLSSSSRP LHKTSSNTSS YGGLVSPTKS EDNNIARTSG AQRLLSAGSL 301: DRATLATAVA RLHPLPAPGS RPASPSRTSF LSSSSISRGM STSRGVSPSR GLSPSRGLSP TRGLSPSRGL SPSRGTNTSC FARPSTPPSR GISPSRIRQT 401: TTSTQSSTTT SVLSFITDVK KGKKASYIED VHQLRLLHNR YLQWRFAIAR AESVMYIQRL TSEETLFNVW HAISELQDHV TRQRIGLQQL KLEIKLNSLL 501: NDQMVSLEDW ATLERDHVSS LVGAISDLEA NTLRLPATGG TKADTESLKA AMSSALDVMQ AMGSSIWSLL SKVEEMNIMV TELAVVVTKE SSMQGKCEDL 601: LASTAIMQIE ECSLRTHLIQ TRREEGEDAE TPPPLLPLSK FPWP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)