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AT4G24972.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.734
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tapetum determinant 1
Curator
Summary (TAIR10)
Encodes a novel small protein which is similar to proteins of unknown function from other plant species. TPD1 is involved in cell specification during anther and pollen development. Identified in a screen for male steriles. Mutants lack tapetal cells and have an increased number of microsporocytes. Expressed in flower buds, leaves and young seedlings. In anthers, TPD1 is expressed throughout pollen development in parietal cells and sporocytes. Physically interacts with the LRR kinase EMS1 and that interaction results in phosphorylation of TPD1.
Computational
Description (TAIR10)
TAPETUM DETERMINANT 1 (TPD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell fate determination, anther development; LOCATED IN: endomembrane system; EXPRESSED IN: microsporocyte, floral meristem, flower, anther, leaf; EXPRESSED DURING: seedling growth; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32583.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
DIP:DIP-29700NeggNOG:ENOG410IYXCeggNOG:ENOG410YPRQEMBL:AL049657
EMBL:AY394846EMBL:CP002687EnsemblPlants:AT4G24972EnsemblPlants:AT4G24972.1
entrez:2745725GeneID:2745725GO:GO:0001709GO:GO:0048653
Gramene:AT4G24972.1hmmpanther:PTHR33184hmmpanther:PTHR33184:SF2HOGENOM:HOG000077765
IntAct:Q6TLJ2iPTMnet:Q6TLJ2KEGG:ath:AT4G24972OMA:RIHINCG
PaxDb:Q6TLJ2Pfam:Q6TLJ2PhylomeDB:Q6TLJ2PRO:PR:Q6TLJ2
ProteinModelPortal:Q6TLJ2Proteomes:UP000006548RefSeq:NP_974612.1STRING:3702.AT4G24972.1
TAIR:AT4G24972tair10-symbols:TPD1TMHMM:TMhelixUniGene:At.47965
UniProt:Q6TLJ2
Coordinates (TAIR10) chr4:+:12838220..12839619
Molecular Weight (calculated) 19457.70 Da
IEP (calculated) 9.04
GRAVY (calculated) -0.06
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRRRLLVSA TLLSYLLYGM ALVSVEASGG EKLRDNLDLT KTTTSSPSIS HRKMLLLSPG TGKTERSVEP ERIGEKCKST DIVVNQAVTE PMPNGIPGYM
101: VEITNQCMSG CIISRIHINC GWFSSAKLIN PRVFKRIHYD DCLVNNGKPL PFGSTLSFHY ANTFPYHLSV AFVTCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)