suba logo
AT4G23140.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
Predictors External Curations
AmiGO : plasma membrane 18215111
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 18215111
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cysteine-rich RLK (RECEPTOR-like protein kinase) 6
Curator
Summary (TAIR10)
Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)
Computational
Description (TAIR10)
cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (CRK6); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (TAIR:AT4G23160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G23140-MONOMERBioCyc:ARA:GQT-1279-MONOMERBioGrid:13702EC:2.7.11.-
eggNOG:COG0515eggNOG:ENOG410IJDFEMBL:AF224706EMBL:AK118493
EMBL:AL022347EMBL:AL031018EMBL:AL161558EMBL:CP002687
EnsemblPlants:AT4G23140EnsemblPlants:AT4G23140.1entrez:828413Gene3D:2.60.120.200
GeneID:828413Genevisible:Q9C5S9GO:GO:0000302GO:GO:0004672
GO:GO:0004674GO:GO:0005524GO:GO:0005886GO:GO:0006468
GO:GO:0009506GO:GO:0016021GO:GO:0042742hmmpanther:PTHR27002
HOGENOM:HOG000116550InParanoid:Q9C5S9IntAct:Q9C5S9InterPro:IPR000719
InterPro:IPR002902InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320
InterPro:IPR017441KEGG:ath:AT4G23140OMA:LTHAWRLPaxDb:Q9C5S9
Pfam:PF00069Pfam:PF01657Pfam:PF07714Pfam:PF16101
Pfam:Q9C5S9Pfscan:PS50011Pfscan:PS51473PhylomeDB:Q9C5S9
PIR:T04831PRIDE:Q9C5S9PRO:PR:Q9C5S9PROSITE:PS00107
PROSITE:PS00108PROSITE:PS50011PROSITE:PS51473ProteinModelPortal:Q9C5S9
Proteomes:UP000006548RefSeq:NP_567678.1RefSeq:NP_849426.1scanprosite:PS00107
scanprosite:PS00108SMART:SM00220SMR:Q9C5S9STRING:3702.AT4G23140.2
SUPFAM:SSF56112TAIR:AT4G23140tair10-symbols:CRK6TMHMM:TMhelix
UniGene:At.21993UniProt:Q9C5S9
Coordinates (TAIR10) chr4:+:12121397..12124037
Molecular Weight (calculated) 74504.80 Da
IEP (calculated) 7.53
GRAVY (calculated) -0.14
Length 674 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLISFNFL FLFSFLTSSF TASAQDPFYL NHYCPNTTTY SSNSTYSTNL RTLLSSLSSR NASYSTGFQN ATAGKAPDRV TGLFLCRGDV SPEVCRNCVA
101: FSVNQTLNLC PKVREAVFYY EQCILRYSHK NILSTAITNE GEFILSNTNT ISPNQKQIDG FTSFVSSTMS EAAGKAANSS RKLYTVNTEL TAYQNLYGLL
201: QCTPDLTRAD CLSCLQSSIN GMALSRIGAR LYWPSCTARY ELYPFYNESA IETPPLPPPP PPPPPRESLV STPPISSSSL PGKSGNSTVL VVAVVVLAVL
301: LFIALVGYCF LAKKKKKTFD TASASEVGDD MATADSLQLD YRTIQTATND FAESNKIGRG GFGEVYKGTF SNGKEVAVKR LSKNSRQGEA EFKTEVVVVA
401: KLQHRNLVRL LGFSLQGEER ILVYEYMPNK SLDCLLFDPT KQIQLDWMQR YNIIGGIARG ILYLHQDSRL TIIHRDLKAS NILLDADINP KIADFGMARI
501: FGLDQTQDNT SRIVGTYGYM APEYAMHGQF SMKSDVYSFG VLVLEIISGR KNSSFGESDG AQDLLTHAWR LWTNKKALDL VDPLIAENCQ NSEVVRCIHI
601: GLLCVQEDPA KRPAISTVFM MLTSNTVTLP VPRQPGFFIQ CRAVKDPLDS DQSTTTKSFP ASIDDESITD LYPR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)