AT4G22980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT5G51920.1); Has 520 Blast hits to 468 proteins in 130 species: Archae - 5; Bacteria - 23; Metazoa - 99; Fungi - 131; Plants - 231; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12043974..12045653 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 64054.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.71 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||
| Length | 559 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSHFIQEAS EACFNGCCSS PFSSHSMSEK PEELEFSVTT TGTSFLTRNT KFTSQESLPR LRTSFYDLIT AFPDYLQTNQ ADHLRSTEYQ NLSSSSHVFG 101: QQQPLFSYSQ FREISESESD LNHSLLTLSC KQVSSGKELL SFEEESRFQS RIRKRITSFM NLEESEYHMI LTQDRSSAFK IVAELYSFKT NPNLLTVYNY 201: EDEAVEEMIR ISEKKGIKPQ SAEFSWPSTE ILSEKLKRRI TRSKRRGKRG LFVFPLQSLV TGASYSYSWM SLARESEWHV LLDTSALGSK DMETLGLSLF 301: QPDFLICSFT EVLGQDDPSG FGCLFVKKSS STALSEEPTN PENLTAVKAE PSWKWKTEYQ AGYNEITPVD HEDHKAASTS SSEIVEIESS VKQDKAMIEF 401: QGLDHADSLG LILISRRSKS LTLWLLRALR TLQHPGYHQT EMPLVKLYGP KTKPSRGPSI SFNIFDWQGE KVDPLMVERL AEREKIGLRC AYLHKFRIGN 501: KRRSDEAVSL RLSVVTVRLG GFMTNFEDVF KVWEFVSRFL DADFVEKEKW RMKALDKNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)