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AT4G22760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G45350.1); Has 39267 Blast hits to 14026 proteins in 231 species: Archae - 0; Bacteria - 16; Metazoa - 78; Fungi - 106; Plants - 38487; Viruses - 0; Other Eukaryotes - 580 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AL021635EMBL:AL161557
EMBL:CP002687EnsemblPlants:AT4G22760EnsemblPlants:AT4G22760.1entrez:828375
Gene3D:1.25.40.10GeneID:828375Genevisible:P0C8Q5Gramene:AT4G22760.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF297HOGENOM:HOG000237569InParanoid:P0C8Q5
InterPro:IPR002885InterPro:IPR011990iPTMnet:P0C8Q5KEGG:ath:AT4G22760
OMA:ASKCFELPaxDb:P0C8Q5Pfam:P0C8Q5Pfam:PF01535
Pfam:PF13041Pfscan:PS51375PIR:T04571PRIDE:P0C8Q5
PRO:PR:P0C8Q5PROSITE:PS51375ProteinModelPortal:P0C8Q5Proteomes:UP000006548
RefSeq:NP_194007.2SMR:P0C8Q5STRING:3702.AT4G22760.1SUPFAM:SSF48452
TAIR:AT4G22760TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.32500
UniGene:At.75274UniProt:P0C8Q5
Coordinates (TAIR10) chr4:+:11960553..11962289
Molecular Weight (calculated) 64590.10 Da
IEP (calculated) 8.09
GRAVY (calculated) -0.15
Length 578 amino acids
Sequence (TAIR10)
(BLAST)
001: MLDSKLRFFL QRCVVLEQAK QVHAQLVVNR YNHLEPILVH QTLHFTKEFS RNIVTYVKRI LKGFNGHDSF SWGCLVRFLS QHRKFKETVD VYIDMHNSGI
101: PPSSHAVTSV LRACGKMENM VDGKPIHAQA LKNGLCGCVY VQTGLVGLYS RLGYIELAKK AFDDIAEKNT VSWNSLLHGY LESGELDEAR RVFDKIPEKD
201: AVSWNLIISS YAKKGDMGNA CSLFSAMPLK SPASWNILIG GYVNCREMKL ARTYFDAMPQ KNGVSWITMI SGYTKLGDVQ SAEELFRLMS KKDKLVYDAM
301: IACYTQNGKP KDALKLFAQM LERNSYIQPD EITLSSVVSA NSQLGNTSFG TWVESYITEH GIKIDDLLST SLIDLYMKGG DFAKAFKMFS NLNKKDTVSY
401: SAMIMGCGIN GMATEANSLF TAMIEKKIPP NVVTFTGLLS AYSHSGLVQE GYKCFNSMKD HNLEPSADHY GIMVDMLGRA GRLEEAYELI KSMPMQPNAG
501: VWGALLLASG LHNNVEFGEI ACSHCVKLET DPTGYLSHLA MIYSSVGRWD DARTVRDSIK EKKLCKTLGC SWVEGSYH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)