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AT4G21770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pseudouridine synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145); Has 5935 Blast hits to 5933 proteins in 1806 species: Archae - 0; Bacteria - 4596; Metazoa - 112; Fungi - 68; Plants - 78; Viruses - 0; Other Eukaryotes - 1081 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G21770-MONOMEREC:5.4.99.-eggNOG:COG0564eggNOG:KOG1919
EMBL:AK226645EMBL:AL035527EMBL:AL161555EMBL:AY142506
EMBL:CP002687EnsemblPlants:AT4G21770EnsemblPlants:AT4G21770.1entrez:828265
GeneID:828265GO:GO:0001522GO:GO:0003723GO:GO:0009507
GO:GO:0009982Gramene:AT4G21770.1hmmpanther:PTHR11079hmmpanther:PTHR11079:SF79
HOGENOM:HOG000242495InParanoid:Q9SVS0InterPro:IPR006145InterPro:IPR020103
KEGG:ath:AT4G21770OMA:KVPWPSSPaxDb:Q9SVS0Pfam:PF00849
Pfam:Q9SVS0PhylomeDB:Q9SVS0PIR:T05852PRIDE:Q9SVS0
PRO:PR:Q9SVS0ProteinModelPortal:Q9SVS0Proteomes:UP000006548RefSeq:NP_193908.1
STRING:3702.AT4G21770.1SUPFAM:SSF55120TAIR:AT4G21770UniGene:At.32599
UniProt:Q9SVS0
Coordinates (TAIR10) chr4:-:11564028..11566345
Molecular Weight (calculated) 52940.30 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.41
Length 472 amino acids
Sequence (TAIR10)
(BLAST)
001: MASPALTGGY RNLTAPVSLL RTLASTRVTT PLFRSNKHSP RFISSPKRFT CLSLLKTDSQ NQTTLSSSSN SGYHEYNRLM PCPAYNLPPR IEHMVVLEDD
101: VLVSEFISKQ LDLPPLYVAD LIRFGAVHYA LVCPKPPPTA TPEEIILFEE VTSPSVLKKR SSIKGKTVRE AQKTFRVTHT NQYAEAGTYL RVHVHPKRSP
201: RCYEIDWKSR IVAVTDSYVI LDKPAGTTVG GTTDNIEESC ATFASRALDL PEPLKTTHQI DNCTEGCVVF ARTKEYCSVF HTKIRNKEVK KLYRALAAAP
301: LPIGIISHYM RPKNMAPRLV AEDSIQGWHL CQLEVLECKK IPWPDAATEK KHDIEDCGWT SKEFAYECTI NLLTGKTHQI RAQLAACGAP LVGDSMYMPA
401: AIAEMGNPDT NPYGKAKKHY TMEENQKETA VAEWIDRHGK EPRVGIGLQA CQISWDDDDG EHFYEAGTPW WR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)