AT4G21770.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 0.994 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pseudouridine synthase family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145); Has 5935 Blast hits to 5933 proteins in 1806 species: Archae - 0; Bacteria - 4596; Metazoa - 112; Fungi - 68; Plants - 78; Viruses - 0; Other Eukaryotes - 1081 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:11564028..11566345 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 52940.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.97 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 472 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASPALTGGY RNLTAPVSLL RTLASTRVTT PLFRSNKHSP RFISSPKRFT CLSLLKTDSQ NQTTLSSSSN SGYHEYNRLM PCPAYNLPPR IEHMVVLEDD 101: VLVSEFISKQ LDLPPLYVAD LIRFGAVHYA LVCPKPPPTA TPEEIILFEE VTSPSVLKKR SSIKGKTVRE AQKTFRVTHT NQYAEAGTYL RVHVHPKRSP 201: RCYEIDWKSR IVAVTDSYVI LDKPAGTTVG GTTDNIEESC ATFASRALDL PEPLKTTHQI DNCTEGCVVF ARTKEYCSVF HTKIRNKEVK KLYRALAAAP 301: LPIGIISHYM RPKNMAPRLV AEDSIQGWHL CQLEVLECKK IPWPDAATEK KHDIEDCGWT SKEFAYECTI NLLTGKTHQI RAQLAACGAP LVGDSMYMPA 401: AIAEMGNPDT NPYGKAKKHY TMEENQKETA VAEWIDRHGK EPRVGIGLQA CQISWDDDDG EHFYEAGTPW WR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)