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AT3G17830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Molecular chaperone Hsp40/DnaJ family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Molecular chaperone Hsp40/DnaJ family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT1G80030.2); Has 28823 Blast hits to 28018 proteins in 3494 species: Archae - 196; Bacteria - 10926; Metazoa - 4489; Fungi - 2504; Plants - 2754; Viruses - 18; Other Eukaryotes - 7936 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0715EMBL:BT029219EMBL:CP002686
EnsemblPlants:AT3G17830EnsemblPlants:AT3G17830.1entrez:821051Gene3D:1.10.287.110
Gene3D:2.10.230.10GeneID:821051GO:GO:0005524GO:GO:0006457
GO:GO:0009408GO:GO:0009507GO:GO:0016021GO:GO:0046872
Gramene:AT3G17830.1HAMAP:MF_01152hmmpanther:PTHR24078hmmpanther:PTHR24078:SF231
HOGENOM:HOG000226717InterPro:IPR001305InterPro:IPR001623InterPro:IPR002939
InterPro:IPR008971InterPro:IPR012724InterPro:IPR018253KEGG:ath:AT3G17830
KO:K03686OMA:DGFFGGMPfam:PF00226Pfam:PF00684
Pfam:PF01556Pfscan:PS50076Pfscan:PS51188PhylomeDB:Q058J9
PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076PROSITE:PS51188
Proteomes:UP000006548RefSeq:NP_188410.2scanprosite:PS00636SMART:SM00271
SMR:Q058J9STRING:3702.AT3G17830.1SUPFAM:SSF46565SUPFAM:SSF49493
SUPFAM:SSF57938TAIR:AT3G17830TIGRfam:TIGR02349TIGRFAMs:TIGR02349
TMHMM:TMhelixUniGene:At.50194UniProt:Q058J9
Coordinates (TAIR10) chr3:+:6101868..6104503
Molecular Weight (calculated) 57262.40 Da
IEP (calculated) 9.96
GRAVY (calculated) -0.58
Length 517 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAMARCALI PSINPAHSFR HQFPQPNASF YLPPTLPIFS RVRRFGISGG YRRRVITMAA GTDHYSTLNV NRNATLQEIK SSYRKLARKY HPDMNKNPGA
101: EDKFKQISAA YEVLSDEEKR SAYDRFGEAG LEGDFNGSQD TSPGVDPFDL YSAFFGGSDG FFGGMGESGG MGFDFMNKRS LDLDIRYDLR LSFEEAVFGV
201: KREIEVSYLE TCDGCGGTGA KSSNSIKQCS SCDGKGRVMN SQRTPFGIMS QVSTCSKCGG EGKTITDKCR KCIGNGRLRA RKKMDVVVPP GVSDRATMRI
301: QGEGNMDKRS GRAGDLFIVL QVDEKRGIRR EGLNLYSNIN IDFTDAILGA TTKVETVEGS MDLRIPPGTQ PGDTVKLPRK GVPDTDRPSI RGDHCFVVKI
401: SIPKKLSERE RKLVEEFSSL RRSSSSTGPT ETRQEEQSFG SEPRKEPSLW HKMKNFIRPE DSRTKFGTMS LNPSLPLRRM KVSETSIAFS VLALCVITSA
501: VALVQKKGNR LKQKKET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)