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AT4G17420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.555
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tryptophan RNA-binding attenuator protein-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tryptophan RNA-binding attenuator protein-like; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF124 (InterPro:IPR002838), Tryptophan RNA-binding attenuator protein-like (InterPro:IPR016031); BEST Arabidopsis thaliana protein match is: Tryptophan RNA-binding attenuator protein-like (TAIR:AT5G47420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:827453eggNOG:COG2013eggNOG:ENOG410IKDZEMBL:BT004256
EMBL:BT005622EMBL:CP002687EnsemblPlants:AT4G17420EnsemblPlants:AT4G17420.1
entrez:827453ExpressionAtlas:Q84J77Gene3D:3.60.160.10GeneID:827453
GO:GO:0016021Gramene:AT4G17420.1hmmpanther:PTHR31801hmmpanther:PTHR31801:SF3
HOGENOM:HOG000224090InterPro:IPR002838InterPro:IPR016031OMA:GMWQWLF
Pfam:PF01987PhylomeDB:Q84J77Proteomes:UP000006548RefSeq:NP_567527.1
SMR:Q84J77SUPFAM:SSF51219TAIR:AT4G17420TMHMM:TMhelix
UniGene:At.33000UniProt:Q84J77
Coordinates (TAIR10) chr4:-:9722544..9724443
Molecular Weight (calculated) 30858.80 Da
IEP (calculated) 7.94
GRAVY (calculated) 0.33
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAPFFSTPF QPYVYQSQED TITPFQILGG EAQVVQIMLK PQEKVIAKPG SMCYMSGSIE MDNTYTPEQE VGVVQWILGK SVSSIVLRNT GQNDGFVGIA
101: APSLARILPL DLAMFGGDIL CQPDAFLCSV HDVKVVNTVY QRHRARNIAA AGAEGVLRQR LSGQGLAFII AGGSVVQKNL EVGEVLTIDV SCIAALTPSI
201: NFQIKYNAAP VRRAVFGGDN VVTATLTGPG IVFIQSLPFH RLSQRIARSV TSPNMRENPR LLVQIGLFIF LAYVVIVSSL ILTEM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)