suba logo
AT4G15920.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24381066 (2014): plant-type vacuole plant-type vacuole membrane
  • PMID:23583552 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nodulin MtN3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nodulin MtN3 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT3G16690.1); Has 980 Blast hits to 942 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 0; Plants - 645; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).
Protein Annotations
BioGrid:12568eggNOG:ENOG4111M4ReggNOG:KOG1623EMBL:AL161542
EMBL:BT002983EMBL:CP002687EMBL:Z97339EnsemblPlants:AT4G15920
EnsemblPlants:AT4G15920.1entrez:827274GeneID:827274Genevisible:Q84WN3
GO:GO:0005353GO:GO:0006995GO:GO:0007623GO:GO:0009646
GO:GO:0009705GO:GO:0009750GO:GO:0015755GO:GO:0016021
GO:GO:0051119GO:GO:0051260GO:GO:0070417GO:GO:1902334
Gramene:AT4G15920.1hmmpanther:PTHR10791hmmpanther:PTHR10791:SF29HOGENOM:HOG000237944
InParanoid:Q84WN3InterPro:IPR004316KEGG:ath:AT4G15920KO:K15382
PaxDb:Q84WN3Pfam:PF03083Pfam:Q84WN3PhylomeDB:Q84WN3
PIR:A71425PRIDE:Q84WN3PRO:PR:Q84WN3ProteinModelPortal:Q84WN3
Proteomes:UP000006548RefSeq:NP_193327.5STRING:3702.AT4G15920.1TAIR:AT4G15920
tair10-symbols:AtSWEET17tair10-symbols:SWEET17TMHMM:TMhelixUniGene:At.24131
UniProt:Q84WN3
Coordinates (TAIR10) chr4:-:9030742..9033343
Molecular Weight (calculated) 26814.90 Da
IEP (calculated) 6.53
GRAVY (calculated) 0.55
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEASFYIGV IGNVISVLVF LSPVETFWKI VKRRSTEEYK SLPYICTLLG SSLWTYYGIV TPGEYLVSTV NGFGALVETI YVSLFLFYAP RHLKLKTVDV
101: EAMLNVFFPI AAIVATRSAF EDEKMRSQSI GFISAGLNII MYGSPLSAMK TVVTTKSVKY MPFWLSFFLF LNGAIWAVYA LLQHDVFLLV PNGVGFVFGT
201: MQLILYGIYR NAKPVGLSNG LSEIAQDEEE GLTSRVEPLL S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)