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AT4G14590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.963
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo defective 2739
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2739 (emb2739); CONTAINS InterPro DOMAIN/s: Integrator complex, subunit 3 (InterPro:IPR019333); Has 179 Blast hits to 170 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRCWeggNOG:KOG4262EMBL:AL161539EMBL:CP002687
EMBL:Z97336EnsemblPlants:AT4G14590EnsemblPlants:AT4G14590.1entrez:827107
GeneID:827107Gramene:AT4G14590.1hmmpanther:PTHR13587HOGENOM:HOG000114090
InterPro:IPR019333KEGG:ath:AT4G14590KO:K13140OMA:RFPAFYH
Pfam:PF10189PhylomeDB:O23315PIR:D71408Proteomes:UP000006548
RefSeq:NP_193195.1SMR:O23315STRING:3702.AT4G14590.1TAIR:AT4G14590
tair10-symbols:emb2739UniGene:At.33265UniProt:O23315
Coordinates (TAIR10) chr4:+:8374391..8375962
Molecular Weight (calculated) 59038.60 Da
IEP (calculated) 7.48
GRAVY (calculated) 0.05
Length 508 amino acids
Sequence (TAIR10)
(BLAST)
001: MENHFVTSKL IRVSLHEVEN QLELSLRQAF ENLQPKLRPP FSLELPDPQE YLELNKAIVY GVLCEPNSSK THIKHLHALV TDGYAFFTSL LIGIVVELYV
101: KLVDSAKIQL IWVTKEMIDV SSVGIEDLVV SLLRRIGISL FLEKWECLLD DSPLVLTSAL YSFLRLLADH YRVLGVVKLE NVKRLEIKFC VKMFREQLHL
201: SLKIGRDLIL LLQDLSHVSE FREIWNDLVS NHCSEIYQLK TSSRYFLLRI TPEMETQLRF LLGNVKLGSH KRHQIWFLKK FLLGPEKETL LIDIVRFVCC
301: VIHPTNEIIR SEIMPRWAII GWLLELCRQN HHIERSVMLA LFYDWLFFDE RIDNIMNVEP AALLMVWSIP QYPHITHSLL EFLLHLVETY DITRRDTIVR
401: GLTSAFREIE RKGVIRSLDI FLANPALAPD LKKKLANLLS CHQEKTVHVN LNQVSVLSKQ TVLSSEANLK DCSTKIVDTP DQKLDNSVEN PAKNHKVELF
501: KEFIRPSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)