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AT4G14520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-directed RNA polymerase II-related
Curator
Summary (TAIR10)
Protein of unknown function homologous to the DNA-directed RNA polymerase II subunit, NRPB7 (At5g59180)
Computational
Description (TAIR10)
DNA-directed RNA polymerase II-related; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb7-like, N-terminal domain (TAIR:AT4G14660.1); Has 104 Blast hits to 104 proteins in 18 species: Archae - 6; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:12396DNASU:827099eggNOG:COG1095eggNOG:KOG3298
EMBL:AK226530EMBL:AL161539EMBL:BT010936EMBL:BT011642
EMBL:CP002687EMBL:Z97336EnsemblPlants:AT4G14520EnsemblPlants:AT4G14520.1
EnsemblPlants:AT4G14520.2EnsemblPlants:AT4G14520.3entrez:827099Gene3D:2.40.50.140
GeneID:827099GO:GO:0003899GO:GO:0005634Gramene:AT4G14520.1
Gramene:AT4G14520.2Gramene:AT4G14520.3hmmpanther:PTHR12709hmmpanther:PTHR12709:SF3
HOGENOM:HOG000241228InParanoid:Q6NML5InterPro:IPR012340InterPro:IPR022967
iPTMnet:Q6NML5KEGG:ath:AT4G14520KO:K16253OMA:HEKACRE
PaxDb:Q6NML5Pfam:Q6NML5PhylomeDB:Q6NML5PIR:E71407
PRO:PR:Q6NML5ProteinModelPortal:Q6NML5Proteomes:UP000006548RefSeq:NP_001190729.1
RefSeq:NP_193188.2RefSeq:NP_849385.1SMART:SM00316STRING:3702.AT4G14520.1
SUPFAM:SSF50249TAIR:AT4G14520UniGene:At.33272UniProt:Q6NML5
Coordinates (TAIR10) chr4:+:8342471..8343073
Molecular Weight (calculated) 22750.50 Da
IEP (calculated) 9.35
GRAVY (calculated) -0.34
Length 200 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSEVEMARD VAICAKHLNG QSPHQPILCR LLQDLIHEKA CREHGFYLGI TALKSIGNNK NNNIDNENNH QAKILTFPVS FTCRTFLPAR GDILQGTVKK
101: VLWNGAFIRS GPLRYAYLSL LKMPHYHYVH SPLSEDEKPH FQKDDLSKIA VGVVVRFQVL AVRFKERPHK RRNDYYVLAT LEGNGSFGPI SLTGSDEPYM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)