AT4G12710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.820 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G03440.1); Has 4315 Blast hits to 2886 proteins in 265 species: Archae - 2; Bacteria - 8; Metazoa - 965; Fungi - 769; Plants - 2142; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:7485040..7486733 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43524.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVEENQNQM MASIAGDSTV TANISEEDEA EEETTTNTWK TTKELLILHL SKKLLHGDLD FRIEAAKEIR KLLRKSPVKS SARSKLADAG VIPPLVPMLF 101: SSNVDARHAS LLALLNLAVR NERNKIEIVK AGAVPPLIQI LKLHNASLRE LATAAILTLS AAPANKAMII SSGVPPLLIQ MLSSGTVQGK VDAVTALHNL 201: SACKEYSAPI LDAKAVYPLI HLLKECKKHS KFAEKATALV EMILSHSEDG RNAITSCEDG ILTLVETVED GSPLSIEHAV GALLSLCRSD RDKYRKLILK 301: EGAIPGLLSS TVDGTSKSRD RARVLLDLLR ETPREKEMTP LTLEKIVYGI AVQVDGAEKA AETAKKLLQD MVHRSMELSM KSIQHKAASC ASIPDISSKS 401: NS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)