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AT4G01790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); Has 95 Blast hits to 95 proteins in 35 species: Archae - 3; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
DNASU:827957eggNOG:COG1358eggNOG:KOG3387EMBL:AC007138
EMBL:AL161492EMBL:BT024769EMBL:CP002687EnsemblPlants:AT4G01790
EnsemblPlants:AT4G01790.1entrez:827957Gene3D:3.30.1330.30GeneID:827957
GO:GO:0005840Gramene:AT4G01790.1hmmpanther:PTHR21596HOGENOM:HOG000070738
InterPro:IPR004038InterPro:IPR029064KEGG:ath:AT4G01790OMA:EKFWFKQ
Pfam:PF01248PhylomeDB:Q9SYH9PIR:A85023PRO:PR:Q9SYH9
Proteomes:UP000006548RefSeq:NP_192088.1STRING:3702.AT4G01790.1SUPFAM:SSF55315
TAIR:AT4G01790UniGene:At.34372UniGene:At.49403UniProt:Q9SYH9
Coordinates (TAIR10) chr4:+:769868..770728
Molecular Weight (calculated) 18861.20 Da
IEP (calculated) 10.58
GRAVY (calculated) -0.44
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGVTPINPQ KKIEADSNPV KESDYYEGER LTHLLDLIQR GIETSKLSNV NSLPEKIWLK KQIAIGINEV TRVLERMNPN NTSDQQQNPK QLQVVILVAD
101: CKPRMLTKHI PNLAASRNVP VLYVRDNKRA SLRLGELVKL KTALAIGIKA RGNDLNLLLK QILPRDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)