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AT3G04020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.973
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
DNASU:819557eggNOG:ENOG410IK40eggNOG:ENOG4111RJFEMBL:CP002686
EnsemblPlants:AT3G04020EnsemblPlants:AT3G04020.1entrez:819557Gene3D:2.30.110.10
Gene3D:3.20.180.10GeneID:819557GO:GO:0010181GO:GO:0016491
Gramene:AT3G04020.1hmmpanther:PTHR37375hmmpanther:PTHR37375:SF1InParanoid:F4J2F8
InterPro:IPR012349InterPro:IPR019595KEGG:ath:AT3G04020OMA:SSCMFID
PaxDb:F4J2F8Pfam:PF10615PRIDE:F4J2F8ProteinModelPortal:F4J2F8
Proteomes:UP000006548RefSeq:NP_187052.4STRING:3702.AT3G04020.1SUPFAM:SSF50475
TAIR:AT3G04020UniGene:At.40916UniProt:F4J2F8
Coordinates (TAIR10) chr3:+:1040548..1042377
Molecular Weight (calculated) 34691.70 Da
IEP (calculated) 7.10
GRAVY (calculated) -0.38
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MMKGSKANLS ALAEKCKTVI VSNWQGYLNT VKPEDKASII HTSKIKYVMR RGKPYLWVPE SEPHNVNIMF DERGSFSIAH PYPGPLAALF KSIGKLPERV
101: AFTGEIVPVK EKRVDAVKKY VEEAIQSEMK AISDTPNSVR SILNSSDQMY ASRCDSLRAL INDAKEKYVI YKFVPSSCMF IDPNGTKEID LKVLELSKPD
201: PLGTWSTKLV DGINKNESRR RALILFCLYF LDINARDAYM VSVDRKGFHL LGKVPSEQEA GDEYQWREFR FEFEEEVKDV EAFCHQLVEM EQEVVSKFTD
301: HTGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)