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AT3G62200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Putative endonuclease or glycosyl hydrolase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (TAIR:AT5G61190.1); Has 3997 Blast hits to 3396 proteins in 338 species: Archae - 0; Bacteria - 122; Metazoa - 1660; Fungi - 937; Plants - 691; Viruses - 43; Other Eukaryotes - 544 (source: NCBI BLink).
Protein Annotations
DNASU:825393eggNOG:ENOG410IFUSeggNOG:ENOG410XQFXEMBL:AL138651
EMBL:CP002686EnsemblPlants:AT3G62200EnsemblPlants:AT3G62200.1entrez:825393
Gene3D:3.40.50.1010GeneID:825393GO:GO:0004519GO:GO:0005777
GO:GO:0010468Gramene:AT3G62200.1hmmpanther:PTHR14379hmmpanther:PTHR14379:SF7
HOGENOM:HOG000242478InterPro:IPR021139InterPro:IPR024768InterPro:IPR025677
InterPro:IPR029060KEGG:ath:AT3G62200OMA:HSGSGIFPANTHER:PTHR14379
Pfam:PF01936Pfam:PF14418PhylomeDB:Q9M1Q4PIR:T48012
Proteomes:UP000006548RefSeq:NP_191779.1TAIR:AT3G62200UniGene:At.34162
UniProt:Q9M1Q4
Coordinates (TAIR10) chr3:-:23023437..23025671
Molecular Weight (calculated) 74190.30 Da
IEP (calculated) 9.32
GRAVY (calculated) -0.66
Length 673 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTNSASDGD FGTNSVPAEM AEAQYVRAKT SVWWDIENCQ VPNGLDAHGI AQNITSALQK MNYCGPVSIS AYGDTNRIPL TIQHALNSTG IALNHVPAGV
101: KDASDKKILV DMLFWALDNP APANFMLISG DRDFSNALHG LRMRRYNVLL AQPLKASVPL VHAAKTVWLW TSLSAGGIPL TRAESLQLVA NQTTPKPGSE
201: IPSSQPLDSN SDSRRVFDNK SKVKYVPKPS NHQPNNNYRQ QQQNTQGKQF KKAPHEFFGT SEPSVSTSRP PPPNLPSSNV NTFPGNVMTN PQNQNQYTYP
301: PRPGPFPPRQ PYPNTDPSWN NGNSIPNHAQ NYYPNAARPG AATMRPPYGN VFRPYRPENL NPPVGNGFRP MQHPRNDGPR FPSPPLLTPL DISNLSVSQY
401: PSQTQNRPNF NPQVRQEFRP KMESSYTHNG PNKSYIPRCS SAPVTQSTTT TAHTYPSSPG VPPSQPPMVT GSGSSNDRWG TQECPPPSEY VQGLIGVILH
501: ALHILKTEKV MPTEPNISDC IQYGDPKHHG TDVKKALESA LEHHMIMMTN VGKLKLYIGK NEALWNCVNP LGANAKQYPK ETWDRIQQFL TSSSGRVEFT
601: ATTCRYEAAQ VLKKECLKEF TLGDILQILN ITATTKKWIT HHQTGWKPIT ISLAAETTNE TATEADPGIQ TVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)