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AT3G60040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Pentatricopeptide repeat (InterPro:IPR002885), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT1G06630.2); Has 42185 Blast hits to 11085 proteins in 246 species: Archae - 5; Bacteria - 27; Metazoa - 105; Fungi - 161; Plants - 41065; Viruses - 0; Other Eukaryotes - 822 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AK118823EMBL:AL138658
EMBL:CP002686EnsemblPlants:AT3G60040EnsemblPlants:AT3G60040.1entrez:825174
Gene3D:3.80.10.10GeneID:825174Genevisible:Q8GWI2Gramene:AT3G60040.1
hmmpanther:PTHR32141hmmpanther:PTHR32141:SF18InParanoid:Q8GWI2InterPro:IPR001810
InterPro:IPR013101InterPro:IPR032675KEGG:ath:AT3G60040PaxDb:Q8GWI2
Pfam:PF00646Pfam:PF01535Pfam:PF07723Pfam:PF13041
Pfam:PF13456Pfam:Q8GWI2Pfscan:PS50181Pfscan:PS51375
PhylomeDB:Q8GWI2PIR:T47828PRIDE:Q8GWI2PRO:PR:Q8GWI2
PROSITE:PS50181ProteinModelPortal:Q8GWI2Proteomes:UP000006548RefSeq:NP_191563.1
SMR:Q8GWI2STRING:3702.AT3G60040.1SUPFAM:SSF52047SUPFAM:SSF81383
TAIR:AT3G60040TIGRfam:TIGR00756UniGene:At.34516UniProt:Q8GWI2
Coordinates (TAIR10) chr3:-:22175937..22179728
Molecular Weight (calculated) 94199.10 Da
IEP (calculated) 8.23
GRAVY (calculated) 0.07
Length 838 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIGWSLHNR DGTQILHGSG AIHPTQSPTE AEAEALRLAV LDLRRLGYSH VTFCGDLKLI YDTLQRCALR GNNASWKYLH IATYLADVLK ISKLCSFNFI
101: HISRDANDIA DRLAKQARCN GLDYVICWTS SSLVLNVKQR NYVTDIYNDV NNISSINAFQ DLAGSLDELK TTSFIVVLTF WVCFLIKTPI KFRIEGTTPS
201: FSGSVFALLH DSVSGTFISM DAKMFDTICS RDAISWLPDE VLGKILSLIP TKQAVSTSLL AKKWRTIFRL VDHLELDDSF SLQAVKDQTP GLRKHVRFVF
301: TEDFKIFVDR TLALQCDYPI KNFSLKCHVS KYDERQKACV GRWISNVVGR GVFELDLRMK DPGIHFLPPH LVASKTLVKL TLGTQLCLGQ LPSYVSLPSL
401: KSLFIDTIVF YDIEDLCCVL LAGCPVLEEL SVHHHDFIAT PHTISSPTLK RLSVDYHCPD DVDSASHMSF DLPKLVYLEY SHCALGEYWQ INLESLVEAK
501: LDLGLERKVL RMDVTDLIIG IRNVQSLHLS PDSVHVIYSY CRHGLPVFKN LVNLSFGSKN KRGWRLLANL LKQSTKLETL IVKDLNGYTG DVSMPLNKVT
601: SLHILGYRGT ADEVKQLKSF IGEFECLELV QVDVAEAAED NGKILQSKRD LMMLLGVSLP SKCQFKSVLD ELNVRVSGIL VIGVLDGTQL LLIILLHILG
701: KGNKPLAALT TLNHMKEVGI DPSVLHYTTL IDGYVVSGEL DKAKEMFREM TVKGQLPNVF TYNSMIRGLC MAGEFREACW LLKEMESRGC NPNFVVYSTL
801: VGYLRKAGKL SEARKVIKEM VKKGHYVHLV SKMMKYRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)