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AT3G57980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-binding bromodomain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Bromodomain (InterPro:IPR001487), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT2G42150.1); Has 5050 Blast hits to 3932 proteins in 403 species: Archae - 12; Bacteria - 304; Metazoa - 2409; Fungi - 569; Plants - 345; Viruses - 12; Other Eukaryotes - 1399 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH4MeggNOG:ENOG410YGJ3EMBL:AL132977EMBL:CP002686
EnsemblPlants:AT3G57980EnsemblPlants:AT3G57980.1entrez:824967Gene3D:1.20.920.10
GeneID:824967GO:GO:0003677Gramene:AT3G57980.1hmmpanther:PTHR37888
hmmpanther:PTHR37888:SF2HOGENOM:HOG000242892InterPro:IPR001005InterPro:IPR001487
InterPro:IPR017930KEGG:ath:AT3G57980ncoils:CoilOMA:DRNSEAN
Pfam:PF00249Pfam:PF00439Pfscan:PS50014Pfscan:PS51294
PhylomeDB:Q9M2Q0PIR:T46020PROSITE:PS50014PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_191357.1SMART:SM00297SMR:Q9M2Q0
SUPFAM:SSF47370TAIR:AT3G57980UniGene:At.28706UniProt:Q9M2Q0
Coordinates (TAIR10) chr3:-:21466919..21469148
Molecular Weight (calculated) 70251.20 Da
IEP (calculated) 9.87
GRAVY (calculated) -1.00
Length 632 amino acids
Sequence (TAIR10)
(BLAST)
001: MEELLLACAV HRHGTDSWDS VASEVHKQNS TFRTLTAIDC RHKYNDLKRR FSRNLVSPGS ADEETLAAEI SSVPWLEELR KLRVDELRRE VERYDLSISS
101: LQLKVKTLED EREKSLKTEN SDLDRIAETK ENHTESGNNS GVPVTELKNS PDPNDNSPGT GSENTNRAVK IAEPVDEEPN RIGGEDNDEK PAREDSGRGS
201: CESVAKESDR AEPKREGNDS PELVESMDES KGEEDTKETS DGQSSASFPR KETVDQDQPD NKDQSLTVNK IFVESQPLSD FIEILQSHPI GSHFSRRLET
301: QETSDYYRII RQHIDFEMIR SRVEEGYYKT ARTKFFRDLL LLINNVRVFY GEPSPEFNAA KQLYQLIKKQ MSFKIPKQTL PPPKEDALVT SKEEVKVSSL
401: KPTLSVPIIA CRKRSSLAVR SPASVTETLK KKTRVVPTVD EKQVSEEEEG RPSDKDEKPI VSKKMARGAA PSTAKKVGSR NVKTSLNAGI SNRGRSPNGS
501: SVLKKSVQQK KGINTSGGSK KQSAASFLKR MKGVSSSETV VETVKAESSN GKRGAEQRKS NSKSEKVDAV KLPAGQKRLT GKRPTIEKGS PTKKNSGVAS
601: KRGTASLMAK RDSETSEKET GSSTRPKKRS KR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)