AT3G57630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.647 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : exostosin family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), Exostosin-like (InterPro:IPR004263), EGF-like (InterPro:IPR006210), EGF-like, type 3 (InterPro:IPR000742), EGF-like region, conserved site (InterPro:IPR013032); BEST Arabidopsis thaliana protein match is: FRA8 homolog (TAIR:AT5G22940.1); Has 4457 Blast hits to 2809 proteins in 140 species: Archae - 0; Bacteria - 2; Metazoa - 2721; Fungi - 13; Plants - 998; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:21339543..21343080 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90936.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.40 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||
| Length | 793 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSHQKWKFS WSQIATVASV IVLVSLVHLF LGPVVPSFDS ITVRQAQNLC GPSNESISQV TKNSSQSLVV VAFDRRFPAD SHGAVVYRNA SWKAEIGQWL 101: SSCDAVAKEV DIIEPIGGRK CMSDCSGQGV CNHEFGLCRC FHGFTGEDCS QKLRLDCNYE KTPEMPYGKW VVSICSRHCD TTRAMCFCGE GTKYPNRPVP 201: ESCGFQINSP TNPDEPKMTD WSKPDLDILT TNSSKQGWCN VDPEDAYAMK VKIKEECDCK YDCLWGRFCE IPVQCTCVNQ CSGHGKCRGG FCQCDKGWFG 301: TDCSIPSTLS TVGEWPQWLR PAHLEVPSEK NVPGNLINLS AVVKKKRPLI YIYDLPPDFN SLLIEGRHFK FECVNRIYDE RNATVWTDYL YGSQMAFYEN 401: ILATAHRTMN GEEADFFFVP VLDSCIINRA DDAPHINMQN HTGLRSSLTL EFYKRAYEHI VEKYPYWNRS AGRDHIWFFS WDEGACYAPK EIWNSMMLVH 501: WGNTNSKHNH STTAYFGDNW DDISDERRGD HPCFDPRKDL VIPAWKVPDP YSMRKNYWER PREKRKTLFY FNGNLGPAYE KGRPEDSYSM GIRQKLAEEF 601: GSSPNKEGKL GKQHAEDVIV TPLRSDNYHK DIANSIFCGA FPGDGWSGRM EDSILQGCVP VIIQDGIYLP YENMLNYESF AVRVNEDDIP NLINTLRGFS 701: EAEIQFRLGN VKELWQRFLF RDSILLEAER QKATYGHEED WAVQFSKLKH DDIFATIIQT LHFKLHNDPW RREQAVNRTK DYGLPQECLH KTS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)