AT3G45860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.996 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cysteine-rich RLK (RECEPTOR-like protein kinase) 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a cysteine-rich receptor-like protein kinase. Involved in programmed cell death and defense response to pathogen. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (CRK4); FUNCTIONS IN: kinase activity; INVOLVED IN: defense response to bacterium, defense response, programmed cell death, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (TAIR:AT4G23270.1); Has 119379 Blast hits to 118105 proteins in 4551 species: Archae - 90; Bacteria - 13618; Metazoa - 44322; Fungi - 10003; Plants - 33611; Viruses - 380; Other Eukaryotes - 17355 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:16863401..16866041 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 75926.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 676 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSFFWLFPFL LHLSFADSLS PLSAPVQNFI HLNHSCPSSI LTYSRNSTYF TNLKTLLSSL SSRNASYSTG FQTATAGQAP DRVTGLFLCR GDVSQEVCRN 101: CVAFSVKETL YWCPYNKEVV LYYDECMLRY SHRNILSTVT YDGSAILLNG ANISSSNQNQ VDEFRDLVSS TLNLAAVEAA NSSKKFYTRK VITPQPLYLL 201: VQCTPDLTRQ DCLRCLQKSI KGMSLYRIGG RFFYPSCNSR YENYSFYNET ATRSSSPPSL PPRSTPQQQL KLAPPPLISE RGKGRNSSVI IVVVVPIIAL 301: LLLFVAFFSL RAKKTRTNYE REPLTEESDD ITTAGSLQFD FKAIEAATNK FCETNKLGQG GFGEVYKGIF PSGVQVAVKR LSKTSGQGER EFANEVIVVA 401: KLQHRNLVRL LGFCLERDER ILVYEFVPNK SLDYFIFDST MQSLLDWTRR YKIIGGIARG ILYLHQDSRL TIIHRDLKAG NILLGDDMNA KIADFGMARI 501: FGMDQTEANT RRIVGTYGYM SPEYAMYGQF SMKSDVYSFG VLVLEIISGK KNSNVYQMDG TSAGNLVTYT WRLWSNGSPL ELVDPSFRDN YRINEVSRCI 601: HIALLCVQEE AEDRPTMSAI VQMLTTSSIA LAVPQRPGFF FRSSKHEQVG LVDRLSINTS ALCSVDDASI TNVTPR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)