AT3G43540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1350) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1350); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1350 (InterPro:IPR010765); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1350) (TAIR:AT5G47860.1); Has 426 Blast hits to 356 proteins in 87 species: Archae - 0; Bacteria - 208; Metazoa - 0; Fungi - 0; Plants - 83; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:15430770..15433035 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40981.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.92 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||
| Length | 373 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFGLATSSF LGTQLIPATL FSKRARALSL TVTATGGSRN NKVYTRLDSC LVIPPPPKFK KPRAIVKFLG GAFVGAVPEL TYSYLKELLA KEGYLIVSVP 101: YNVTFDHEQA AKQVYERFNS CLDTIVSSGI PNSNLKPGDL ADLPLFSVGH SNGALLQVLT GSYFAEKIPK VNAIISFNNK SATEAVPYFE QLGPLIQQML 201: PMVEASPVYE MARNASGDVL KLLLDTAGTT ILNNDQEALK SFTKLVDQLP SVFGEVGQGV SEFRPSPLEN RNCFKCSYSV PHTLLVQFNS DAIDETDLLE 301: ETLRPRIESI GGTLEKVRLN GNHLTPCIQD PKWQIGTVYT PADAVAQALK TIPLSETRVL SRTIVDWFRR FEN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)