AT3G42170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BED zinc finger ;hAT family dimerisation domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
transposase-like gene with conserved domains from the family of hAT transposases that includes hobo from Drosophila melanogaster, Activator (Ac) from maize, and Tam3 from snapdragon but lacks several amino acids known to be essential for Ac transposition5. The DAYSLEEPER gene lacks 8 bp duplications and TIRs (a common feature of transcriptionally silent hAT transposases), however, DAYSLEEPER expression was detected, and several expressed sequence tags are available. The expression seems to be under the control of factors determining the circadian rhythm. DAYSLEEPER was isolated as a factor binding to a motif (Kubox1) present in the upstream region of the Arabidopsis DNA repair gene Ku70. Mutant plants lacking DAYSLEEPER or strongly overexpressing this gene do not develop in a normal manner. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BED zinc finger ;hAT family dimerisation domain; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT1G18560.1); Has 1233 Blast hits to 1128 proteins in 97 species: Archae - 0; Bacteria - 4; Metazoa - 232; Fungi - 219; Plants - 755; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:14321838..14323928 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78818.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 696 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVYNDDTEM RSPETQPIKE TALEVYNDTA EIRSPETQPI EETALEVYND TEMVSPETQP IKRRKKKSMV WEHFTIEAVE PNCRRAFCKG CNQSFAYSNG 101: NKVAGTSHLK RHIFKGTCPA LIHTHDNDNN PLMSTPYTPK TDTPRRRYRS QNNASPYVAF NQDKCRQEIA KMIIMHDYPL HMVQHPGFVS FVQSIQPHFD 201: AVSFNNVQGD CVATYLAEKQ NVMKSLEGIP GRFCLTLDFW TSKLTLGYVF ITAHYIDSDW KIQKKLLNVL MESYPEADEA LSLAVANCVS EWGLEGKLFN 301: VTFNHPASNS AVENIRPQLC IKNPGILDGQ LVIGNCVART FGSLAKDVLE KGKDVIKNIR DSVKHVKTSE SHEERFTELK EQLQVPSEKV LSLDDQTQWN 401: TTYMMLVAAS ELKEVFSCLD TADPDYKKPP SAEDWRHVEA LCTFLKPLFE AVSTLQSTGN PSAVTFFHEV WKTQSDLSRA IAGEDPFVTG IAKTMQEKVD 501: KYWRDCSLVL AMAVVMDPRF KMKLVEFSFS KIFGEDAGKN IKTVDDGIHE LFTEYMALPS PQNTTSEGGK ADGLSDFDTY IMETTGQNLK SELDQYLDET 601: LLPRVQEFDV LDWWKQNKLK YPTLSKMARD ILSIPVSAAA FDYVFDMEPR EMDEYKTSLR PETVEALICA REWLLESNAS SSAAAQNASA TIKSEA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)