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AT3G27850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ribosomal protein L12-C
Curator
Summary (TAIR10)
50S ribosomal protein L12-C
Computational
Description (TAIR10)
ribosomal protein L12-C (RPL12-C); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: defense response to bacterium, translation; LOCATED IN: in 6 components; EXPRESSED IN: juvenile leaf, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L7/L12 (InterPro:IPR000206), Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, oligomerisation (InterPro:IPR008932), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: ribosomal protein L12-A (TAIR:AT3G27830.1); Has 8543 Blast hits to 8543 proteins in 2749 species: Archae - 0; Bacteria - 5675; Metazoa - 193; Fungi - 132; Plants - 248; Viruses - 0; Other Eukaryotes - 2295 (source: NCBI BLink).
Protein Annotations
BioGrid:7735eggNOG:COG0222eggNOG:KOG1715EMBL:AP000371
EMBL:AY037241EMBL:AY136300EMBL:AY143956EMBL:CP002686
EMBL:X68046EnsemblPlants:AT3G27850EnsemblPlants:AT3G27850.1entrez:822405
Gene3D:3.30.1390.10GeneID:822405Genevisible:P36212GO:GO:0000311
GO:GO:0003735GO:GO:0006412GO:GO:0009507GO:GO:0009535
GO:GO:0009570GO:GO:0009579GO:GO:0009735GO:GO:0042742
Gramene:AT3G27850.1HAMAP:MF_00368HOGENOM:HOG000248813InParanoid:P36212
InterPro:IPR000206InterPro:IPR008932InterPro:IPR013823InterPro:IPR014719
KEGG:ath:AT3G27850KO:K02935OMA:SHRAINLPaxDb:P36212
Pfam:P36212Pfam:PF00542Pfam:PF16320PhylomeDB:P36212
PIR:C53394PRIDE:P36212PRO:PR:P36212ProDom:PD001326
ProteinModelPortal:P36212Proteomes:UP000006548RefSeq:NP_189423.1SMR:P36212
STRING:3702.AT3G27850.1SUPFAM:SSF48300SUPFAM:SSF54736TAIR:AT3G27850
tair10-symbols:RPL12-CTIGRfam:TIGR00855TIGRFAMs:TIGR00855UniGene:At.20381
UniGene:At.251UniGene:At.71465UniProt:P36212
Coordinates (TAIR10) chr3:+:10324905..10325468
Molecular Weight (calculated) 19683.50 Da
IEP (calculated) 5.37
GRAVY (calculated) 0.05
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTTLSIAT TIRSSSPLTS ASTHHFLSKP TAIEFPFRLS SSSSHRAINL RPISAVEAPE KIEKIGSEIS SLTLEEARIL VDYLQDKFGV SPLSLAPAAA
101: AVAAPADGGA AAVVEEQTEF DVVINEVPSS SRIAVIKAVR ALTSLALKEA KELIEGLPKK FKEGITKDEA EEAKKTLEEA GAKVSIA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)