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AT3G26490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Phototropic-responsive NPH3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G67900.3); Has 883 Blast hits to 855 proteins in 28 species: Archae - 0; Bacteria - 1; Metazoa - 5; Fungi - 0; Plants - 875; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVP8eggNOG:ENOG41105R0EMBL:AP001298EMBL:CP002686
EnsemblPlants:AT3G26490EnsemblPlants:AT3G26490.1entrez:822256GeneID:822256
Genevisible:Q9LIM6GO:GO:0005886GO:GO:0016567Gramene:AT3G26490.1
hmmpanther:PTHR32370hmmpanther:PTHR32370:SF9HOGENOM:HOG000239180InParanoid:Q9LIM6
InterPro:IPR000210InterPro:IPR011333InterPro:IPR027356iPTMnet:Q9LIM6
KEGG:ath:AT3G26490OMA:RIYASKWPaxDb:Q9LIM6Pfam:PF00651
Pfam:PF03000Pfam:Q9LIM6Pfscan:PS51649PhylomeDB:Q9LIM6
PRIDE:Q9LIM6PRO:PR:Q9LIM6PROSITE:PS51649ProteinModelPortal:Q9LIM6
Proteomes:UP000006548RefSeq:NP_189280.1SUPFAM:SSF54695TAIR:AT3G26490
UniGene:At.53508UniPathway:UPA00143UniProt:Q9LIM6
Coordinates (TAIR10) chr3:+:9704142..9706161
Molecular Weight (calculated) 66351.30 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.22
Length 588 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFMELGFRP DTFYTVESVR SVSSDLLNDL VIQVKSTKYL LHKFPMLSKC LRLKNLVSSQ ETETSQEQQV IQLVDFPGET EAFELCAKFC YGITITLCAH
101: NVVAVRCAAE YLGMTEEVEL GETENLVQRL ELFLTTCVFK SWRDSYVTLQ TTKVLPLWSE DLGITNRCIE AIANGVTVSP GEDFSTQLET GLLRNRSRIR
201: RDEILCNGGG GSKAESLRWW GEDLAELGLD LYRRTMVAIK SSHRKISPRL IGNALRIYAS KWLPSIQESS ADSNLVLESV ISLLPEEKSS VPCSFLLQLL
301: KMANVMNVSH SSKMELAIKA GNQLDKATVS ELLIPLSDKS GMLYDVDVVK MMVKQFLSHI SPEIRPTRTR TEHRRSRSEE NINLEEIQEV RGSLSTSSSP
401: PPLLSKVAKL VDSYLQEIAR DVNLTVSKFV ELAETIPDTS RICHDDLYNA IDVYLQVHKK IEKCERKRLC RILDCKKLSV EASKKAAQNE LLPLRVIVQI
501: LFVEQARATL ATTRNNITTN ETAVLKRSFT TRREEGGQEE EERDETKPSG GFLQSTPSRF MALCAIPRQP KKLLCKLLSI SRSLSQRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)