suba logo
AT4G29310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.936
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1005)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1005); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT1G10020.1); Has 138 Blast hits to 138 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK42eggNOG:ENOG410Y9KREMBL:AL161574EMBL:AY093214
EMBL:BT003402EMBL:CP002687EnsemblPlants:AT4G29310EnsemblPlants:AT4G29310.1
entrez:829053GeneID:829053GO:GO:0009505Gramene:AT4G29310.1
hmmpanther:PTHR31317hmmpanther:PTHR31317:SF2HOGENOM:HOG000238259InterPro:IPR010410
KEGG:ath:AT4G29310OMA:CKLRIKHPfam:PF06219PhylomeDB:Q9M0F0
PIR:T13451Proteomes:UP000006548RefSeq:NP_194660.1TAIR:AT4G29310
UniGene:At.31937UniGene:At.67411UniProt:Q9M0F0
Coordinates (TAIR10) chr4:-:14437892..14439609
Molecular Weight (calculated) 45658.50 Da
IEP (calculated) 9.63
GRAVY (calculated) -0.25
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPCPFVRLT IDSLALRLPE TATNKQIGGE VHPSSTPCYC KLRIKHFPSQ KALLPLSSFS DASSPPESST SAPGFHLDAD AIRRISGKKI SLRVSVYAGR
101: TGHTCGVASG KLLGKVEVAV DLAAALSRTV AFHNGWKKLG GDGDKPSARL HLLVCAEPDP RFVFQFGGEP ECSPVVYQIQ DNLKQPVFSC KFSSDRNGRS
201: RSLPSGFTYS SRGWITRTLS GDQWEKKQAR ERKGWMITIH DLSGSPVAAA SMITPFVASP GSDRVSRSNP GAWLILRPHG TCVSSWKPWG RLEAWRERGA
301: IDGLGYKFEL VRDNSTSTGI PIAEGTMSTK QGGKFSIDRR VSGQGESPAI SSPVKGFVMG SSVEGEGKVS KPVVHVGAQH VTCMADAALF VALSAAVDLS
401: VDACQLFSRK LRKELCHDDQ SSLT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)