suba logo
AT3G23640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : heteroglycan glucosidase 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
heteroglycan glucosidase 1 (HGL1); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolases family 31 protein (TAIR:AT5G63840.1); Has 5349 Blast hits to 5021 proteins in 1110 species: Archae - 88; Bacteria - 3100; Metazoa - 761; Fungi - 803; Plants - 278; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G23640-MONOMERBioCyc:ARA:GQT-540-MONOMERCAZy:GH31eggNOG:COG1501
eggNOG:KOG1066EMBL:AY059821EMBL:BT002505EMBL:BT008811
EMBL:CP002686EnsemblPlants:AT3G23640EnsemblPlants:AT3G23640.1EnsemblPlants:AT3G23640.2
entrez:821944Gene3D:3.20.20.70GeneID:821944GO:GO:0004553
GO:GO:0005975GO:GO:0009507GO:GO:0030246Gramene:AT3G23640.1
Gramene:AT3G23640.2gramene_pathway:3.2.1.20gramene_pathway:PWY-842hmmpanther:PTHR22762
hmmpanther:PTHR22762:SF7HOGENOM:HOG000029407InterPro:IPR000322InterPro:IPR011013
InterPro:IPR013785InterPro:IPR017853InterPro:IPR025887InterPro:IPR030458
InterPro:IPR033403KEGG:ath:AT3G23640OMA:DVNMELWPfam:PF01055
Pfam:PF13802Pfam:PF17137PhylomeDB:Q93Y12PROSITE:PS00129
Proteomes:UP000006548RefSeq:NP_001118685.1RefSeq:NP_566736.1scanprosite:PS00129
SMR:Q93Y12STRING:3702.AT3G23640.1SUPFAM:SSF51445SUPFAM:SSF74650
TAIR:AT3G23640tair10-symbols:HGL1UniGene:At.8054UniProt:Q93Y12
Coordinates (TAIR10) chr3:+:8502355..8509358
Molecular Weight (calculated) 110885.00 Da
IEP (calculated) 5.79
GRAVY (calculated) -0.29
Length 991 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLSGDSSET VEMTSTDMIF EPILEHGVFR FDCSVDHRKA AFPSVSFKNS KDREVPIVSH IVPAYIPTCG CLQDQQVVTF EFSPGTSFYG TGEVSGQLER
101: TGKRVFTWNT DAWGYGSGTT SLYQSHPWVL VVLPTGETLG VLADTTRKCE IDLRKEGIIR IISPASYPII TFGPFSSPTA VLESLSHAIG TVFMPPKWAL
201: GYHQCRWSYM SDKRVAEIAQ TFRDKKIPSD VIWMDIDYMD GFRCFTFDKE RFPDPSALAK DLHSNGFKAI WMLDPGIKQE EGYYVYDSGS KNDVWISRAD
301: GKPFTGEVWP GPCVFPDYTN SKARSWWANL VKEFVSNGVD GIWNDMNEPA VFKVVTKTMP ENNIHHGDDE LGGVQNHSHY HNVYGMLMAR STYEGMELAD
401: KNKRPFVLTR AGFIGSQRYA ATWTGDNLSN WEHLHMSISM VLQLGLSGQP LSGPDIGGFA GNATPRLFGR WMGVGAMFPF CRGHSEAGTD DHEPWSFGEE
501: CEEVCRAALK RRYQLLPHFY TLFYIAHTTG APVAAPIFFA DPIDSRLRAV ENGFLLGPLL IYASTLSSQG SHELQHILPR GIWHRFDFAD SHPDLPTLYL
601: QGGSIISLAP PHLHVGEFSL SDDLTLLVSL DENGKAKGLL FEDDGDGYGY TKGRFLVTHY IAERDSSTVT VKVSKTEGDW QRPNRRVHVQ LLLGGGAMLD
701: AWGMDGEFIH IKVPSESGIS ELISTSNERF KLHMENTKLI PEKEVVPGQK GMELSKEPVE LSSGDWKLNI VPWVGGRILS MTHVPSGIQW LHSRIDINGY
801: EEYSGTEYRS AGCTEEYNVI ERDLEHAGEE ESLILEGDVG GGLVLRRKIS IAKDNQRVFR IASSIEARSV GAGSGGFSRL VCLRVHPTFT LLHPTESFVS
901: FTSIDGSKHE VWPDSGDQIY EGNNLPHGKW MLVDKSLNLR MVNRFDVSQV FKCIIHWDCG TVNLELWSKE RPVSKESPLK IEHEYEVTSF P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)