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AT3G23180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HR-like lesion-inducing protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HR-like lesion-inducing protein-related; CONTAINS InterPro DOMAIN/s: HR-like lesion-inducer (InterPro:IPR008637); BEST Arabidopsis thaliana protein match is: HR-like lesion-inducing protein-related (TAIR:AT3G23190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVNZeggNOG:ENOG41105R6EMBL:AB025608EMBL:CP002686
EnsemblPlants:AT3G23180EnsemblPlants:AT3G23180.1entrez:821896GeneID:821896
GO:GO:0005783GO:GO:0016021Gramene:AT3G23180.1hmmpanther:PTHR31474
hmmpanther:PTHR31474:SF1HOGENOM:HOG000153095InterPro:IPR008637KEGG:ath:AT3G23180
OMA:HHDFYNHPfam:PF05514PhylomeDB:Q9LTD0Proteomes:UP000006548
RefSeq:NP_188959.3TAIR:AT3G23180TMHMM:TMhelixUniGene:At.53450
UniProt:Q9LTD0
Coordinates (TAIR10) chr3:+:8277131..8278396
Molecular Weight (calculated) 25220.60 Da
IEP (calculated) 9.96
GRAVY (calculated) -0.15
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVVQRKVKK IGRKVASFPH VETIGRALFA SSFFLSSWHD YMELKANWNG TEDYWSPKFG YSGDQIKHLM TVSIIVRTLG GLIFIYGSFF GAFLLLMYQG
101: IATMVHHDFY NHRLDTEEFG LLYLKLKRIL NETVSYNTAY NLYKSDFDEQ QIEQVKSKFR ELADHAMTNP ALFGHNEFLR RLLSFVKGLA VVGALLFFVD
201: MKYRLNKAKK QSKVKND
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)