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AT3G20300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.991
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3537)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3537); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT1G50630.1); Has 143 Blast hits to 143 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG8ReggNOG:ENOG410XQ41EMBL:AY074551EMBL:AY085004
EMBL:AY139777EMBL:CP002686EnsemblPlants:AT3G20300EnsemblPlants:AT3G20300.1
entrez:821574GeneID:821574GO:GO:0016021Gramene:AT3G20300.1
hmmpanther:PTHR31963hmmpanther:PTHR31963:SF4HOGENOM:HOG000239174InterPro:IPR021924
KEGG:ath:AT3G20300OMA:NYFENNRPfam:PF12056PhylomeDB:Q8VXV8
Proteomes:UP000006548RefSeq:NP_566658.1STRING:3702.AT3G20300.1TAIR:AT3G20300
TMHMM:TMhelixUniGene:At.25147UniProt:Q8VXV8
Coordinates (TAIR10) chr3:-:7079832..7081809
Molecular Weight (calculated) 51328.70 Da
IEP (calculated) 6.96
GRAVY (calculated) 0.12
Length 452 amino acids
Sequence (TAIR10)
(BLAST)
001: MADIDIGTAA TTGGNEGRGG TRERLINREN KFTRSVSHAQ DELHSFRKYL RWMCVDQSSP WTAVLSWSMF VVFTLVVPAT SHFMLACSDC DSHHSRPYDS
101: VVQLSLSSFA ALSFLCLSRF VSKYGLRRFL FFDKLWDESE TVRLGYTNQL NRSLKILSYF VSPCFLAMSS YKIWWYASGA SQIPFLGNVI LSDTVACLME
201: LCSWLYRTTV IFLVCVLFRL ICHLQILRLQ DFAQVFQMDS DVGSILSEHL RIRRHLRIIS HRYRTFILLS LILVTGSQFY SLLITTKAYA ELNIYRAGEL
301: ALCSMTLVTA LLILLRSASK ITHKAQAVTC LAAKWHVCAT IESFETVDGE TPRLVDRASG HGYYPTDDDN GESDSEDYGD EEDDFDNNNL IPAYAYSTIS
401: FQKRQALVNY FENNRSGITV FGFTLDRSTL HTIFGIEMSL VLWLLGKTIG IS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)