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AT1G50630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3537)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3537); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3537 (InterPro:IPR021924); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3537) (TAIR:AT3G20300.1); Has 144 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 142; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ41EMBL:AC012561EMBL:CP002684EnsemblPlants:AT1G50630
EnsemblPlants:AT1G50630.1entrez:841485ExpressionAtlas:Q9LPT3GeneID:841485
GO:GO:0016021Gramene:AT1G50630.1hmmpanther:PTHR31963hmmpanther:PTHR31963:SF4
InterPro:IPR021924OMA:CATLESFPfam:PF12056PhylomeDB:Q9LPT3
Proteomes:UP000006548RefSeq:NP_564578.1STRING:3702.AT1G50630.1TAIR:AT1G50630
TMHMM:TMhelixUniGene:At.20501UniProt:Q9LPT3
Coordinates (TAIR10) chr1:-:18751654..18753569
Molecular Weight (calculated) 51606.10 Da
IEP (calculated) 6.66
GRAVY (calculated) 0.20
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MADIDIAVGK EPLINHENNN NTNKIFNRCV SHQQDELHSF RKYLRWMCVD HSSPWTAILS WTMFIVFTLV VPAISHFLLA CADCDSYHSR PYDSVVQLSL
101: SSVATVSFLC LTRFVSKYGL RRFLFFDKLW DESETVRRNY TNQLNTSLHI VSYFVIPCFS AMSAYKIWWY ASGGSRIPFL GNAVLSDTVA CIMELCSWLY
201: RTTVIFLVCV LFRLICHLQI LRLQDFAKLF QIDSDVGSIL SEHLRIRRHL RIISHRYRSF ILCLLILVTG SQFSSLLITT KAYTEVNIYR AGELALCSMT
301: LVTALLILLR SASKITHKAQ AVTCLAAKWH VCATLESFDQ TVESFDQTVE TPTLVARNNN DNNNVHDVVT LTESDSDEYG DEEDDLDNND IIPVYAFSTM
401: SFQKRQALVS YFENNSAGIT VYGFTLDRGT LHTIFGLELS LVLWLLGKTI GIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)