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AT3G16700.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31023727 (2019): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:21472856 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Fumarylacetoacetate (FAA) hydrolase family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Fumarylacetoacetate (FAA) hydrolase family; FUNCTIONS IN: copper ion binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Fumarylacetoacetase, C-terminal-like (InterPro:IPR002529), Fumarylacetoacetase, C-terminal-related (InterPro:IPR011234); BEST Arabidopsis thaliana protein match is: Fumarylacetoacetate (FAA) hydrolase family (TAIR:AT4G15940.1); Has 10996 Blast hits to 10845 proteins in 1927 species: Archae - 263; Bacteria - 6882; Metazoa - 304; Fungi - 435; Plants - 73; Viruses - 0; Other Eukaryotes - 3039 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G16700-MONOMEReggNOG:COG0179eggNOG:KOG1535EMBL:AB022217
EMBL:AY087490EMBL:CP002686EnsemblPlants:AT3G16700EnsemblPlants:AT3G16700.1
entrez:820922ExpressionAtlas:Q9LUR3Gene3D:3.90.850.10GeneID:820922
GO:GO:0005507GO:GO:0016787GO:GO:0016853Gramene:AT3G16700.1
hmmpanther:PTHR11820HOGENOM:HOG000063753InterPro:IPR011234OMA:KNILAAD
Pfam:PF01557PhylomeDB:Q9LUR3Proteomes:UP000006548RefSeq:NP_188292.1
SMR:Q9LUR3STRING:3702.AT3G16700.1SUPFAM:SSF56529TAIR:AT3G16700
UniGene:At.38854UniProt:Q9LUR3
Coordinates (TAIR10) chr3:+:5687809..5689664
Molecular Weight (calculated) 24418.00 Da
IEP (calculated) 8.93
GRAVY (calculated) 0.04
Length 224 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSMIQRLF KQGTKIVGVG LNYASHAKEL GNALPKDPIV FLKPTSSYLE NGGTIEIPHP LDSLHHEVEL AVVIGQKARD VPERLAMNYI GGYALALDMT
101: ARELQVSAMA SGLPCTLAKG QDTFTPISSV LPKAMVLDPN NLELWLKVDD ETRQKGWTKD MIFKVPYLIS YISSVMTLFK GDVILTGTPE GIGPVKIGQK
201: ITAGITGLSE VQFDVGRRLK PLLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)