AT3G14360.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.934 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G42930.1); Has 1400 Blast hits to 1392 proteins in 294 species: Archae - 0; Bacteria - 352; Metazoa - 56; Fungi - 304; Plants - 428; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:4791596..4793534 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59610.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||
| Length | 518 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHKDNDSGSG SNPGQVSNYL IVRPHRGGYI DLFRYGVRDD QTSKAKFLEM PDNREWSTIT IDEEAEDHRW VIVVSILVRK IIRLLRTPME FTGFVVDFFL 101: NLFSANGGFF GLLLRLIQAK VVIPERGSVT FVSTIGQLDG RISLYKEWNF VEHLEGIDSV DSGRVKIELG SRGLMDLCVM ASKLAYENAK VVENVVDLHW 201: KMNLVEFLDC WNDYQKQMST QVFVFTDKQK DANLIVISFR GTEPFDADDW GTDFDYSWYE VPNVGKLHMG FLEAMGLGNR DDTTTFHYNL FEQTSSEEEN 301: SKKNLLDMVE RSAYYAVRVI LKRLLSEHEN ARFVVTGHSL GGALAILFPT LLVLNEETEI MKRLLGVYTF GQPRIGNREV GLFMKAQLNQ PVDRYFRVVY 401: CNDIVPRLPY DDKTFLYKHF GLCLFYDSFY NETKAEDEPD PNPYGLRYKI LGHVIAVWEL VRGLTMGYTH GPDYKEGWFR ILFRLMGLVI PGLSDHCMTD 501: YVNSVRLGPD NELQMSSL |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)