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AT3G09550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.686
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G12360.1); Has 55803 Blast hits to 24932 proteins in 1099 species: Archae - 58; Bacteria - 5470; Metazoa - 27318; Fungi - 5824; Plants - 4263; Viruses - 331; Other Eukaryotes - 12539 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:CP002686EnsemblPlants:AT3G09550
EnsemblPlants:AT3G09550.1entrez:820112Gene3D:1.25.40.20GeneID:820112
GO:GO:0016021Gramene:AT3G09550.1hmmpanther:PTHR24177hmmpanther:PTHR24177:SF10
InParanoid:F4J181InterPro:IPR002110InterPro:IPR020683InterPro:IPR026961
KEGG:ath:AT3G09550OMA:CGALKANPaxDb:F4J181Pfam:PF12796
Pfam:PF13606Pfam:PF13637Pfam:PF13962Pfscan:PS50088
Pfscan:PS50297PRIDE:F4J181PROSITE:PS50088PROSITE:PS50297
ProteinModelPortal:F4J181Proteomes:UP000006548RefSeq:NP_187566.4SMART:SM00248
SMR:F4J181STRING:3702.AT3G09550.1SUPFAM:SSF48403TAIR:AT3G09550
TMHMM:TMhelixUniGene:At.40085UniProt:F4J181
Coordinates (TAIR10) chr3:+:2932007..2934199
Molecular Weight (calculated) 66253.80 Da
IEP (calculated) 9.84
GRAVY (calculated) -0.19
Length 607 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSRIEEEKE LEPGMEKGLA TDPTSPTGST VADLSPTPTP RKTLVLSNSG KALMVSNSSK SLGLSNSGKR FDPTGKKKYV KQVTGRHNDT ELHLAAQRGD
101: LASVKQILSD IDSQITGTIT GADFDDEVAQ IMTSVVNEVN ELGETPLFTA AEKGNIDVVK ELLPYTTIES LMQKNLSGFD ALHIACSQGH RSIVQLLLEH
201: EPQLSKTVAQ SNATPLVSAA TRGHSEVVNE LLAKDSSLLE ISRSNGKNAL HLAARQGHVD IVRTLLDKDP QLARRTDKKG QTSLHMAVKG VSSQVVRLLL
301: RADPAIVMLP DKFGNTVLHI ATRKKRAEIV NELLQLPDTN VNALTRDHKT AYDIAEGLTH SEETAEIKEI LSRCGALKAN ELNQPRDELR KTVTEIKKDV
401: HTQLEQTRKT NKNVDGIAKE LRKLHRAGIN NATNSVTVVA VLFATVAFAA IFTVPGGDDD HGVAVMVHAT SFKIFFIFNA IALFTSLAVV VVQITLVRGE
501: TKTERRVVEV INKLMWLASV CTTVAFISSS YIVVGRRNRY AAVVVTVIGT VTMTGILSIM TYYVVKSKRT RIVRKKEKKK SARNGTSSWH HANPSETESE
601: VNPIYAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)