AT3G04850.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.999 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Tesmin/TSO1-like CXC domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Tesmin/TSO1-like CXC domain-containing protein; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT3G22780.1); Has 1332 Blast hits to 671 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 459; Fungi - 0; Plants - 369; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:1332269..1335851 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 70977.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 639 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDTPDKNRIS AVSFCNFEDS PVFQYINDLS PIEPVKPGRP ENILHSLVFT SPSSSSSLFC SPQLNSYRDS RFFIKRHRSL DLSSPVVLIG ETLKNSPDAL 101: WEEKLKCRPE KLENVSEPKP FKEQISLAIE LANSLKHGRD GCDIQMVSCD EVPMDADDEI GSGGGSRELS DELCRQSFDP LDFDADSDGV LHTDEMEAES 201: GFGKEVIMFD VADIQNYEQQ IPRTTDPRFY SLASEPQQFS IYCNNSNYVE EREGSCSVQV AAGAPDINLS CSSKVAAIDS TAEAEDKEDK DLQPSGKQRS 301: VRRRCLTFDM GGSHKRIPLR DSTNDLPLDS TSINKAPSPQ NCLDTSKQDT DEILPIPRTI GLHLNGFVNP SVSSGRKKKK IKDGQAFPST TFHYNIEDEF 401: STPVSTKRDL VVFSDVKIME PPERSVEGEC FDQLMAMENR QLSQGLDELG SCKRCKCRKS QCLKLYCECF SAGLFCGEPC SCQNCFNKPI HEDLVMKSRE 501: VIKARNPLAF APKVVSTSDT VIDLWVENSK TPASARHKRG CNCRKSGCSK KYCECFMMGV GCSSNCRCMG CKNTFGHTNE QCAGDSDVVT INDEAKHYGD 601: HGDASRQNEE ILTSERNRLL LPGSVAFRSL TSLSNLSEL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)