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AT3G04850.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tesmin/TSO1-like CXC domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tesmin/TSO1-like CXC domain-containing protein; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT3G22780.1); Has 1332 Blast hits to 671 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 459; Fungi - 0; Plants - 369; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110UR5eggNOG:KOG1171EMBL:AC009465EMBL:BT003926
EMBL:BT005010EMBL:CP002686EnsemblPlants:AT3G04850EnsemblPlants:AT3G04850.1
entrez:819645GeneID:819645GO:GO:0003700GO:GO:0005634
GO:GO:0006355GO:GO:0007275GO:GO:0046872Gramene:AT3G04850.1
hmmpanther:PTHR12446hmmpanther:PTHR12446:SF23HOGENOM:HOG000147065InParanoid:Q84JZ8
InterPro:IPR005172InterPro:IPR028307InterPro:IPR033467KEGG:ath:AT3G04850
OMA:PDKNRISPANTHER:PTHR12446PaxDb:Q84JZ8Pfam:PF03638
Pfam:Q84JZ8Pfscan:PS51634PhylomeDB:Q84JZ8PRIDE:Q84JZ8
PRO:PR:Q84JZ8PROSITE:PS51634ProteinModelPortal:Q84JZ8Proteomes:UP000006548
RefSeq:NP_187136.3SMART:SM01114STRING:3702.AT3G04850.1TAIR:AT3G04850
UniGene:At.40769UniProt:Q84JZ8
Coordinates (TAIR10) chr3:-:1332269..1335851
Molecular Weight (calculated) 70977.30 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.56
Length 639 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTPDKNRIS AVSFCNFEDS PVFQYINDLS PIEPVKPGRP ENILHSLVFT SPSSSSSLFC SPQLNSYRDS RFFIKRHRSL DLSSPVVLIG ETLKNSPDAL
101: WEEKLKCRPE KLENVSEPKP FKEQISLAIE LANSLKHGRD GCDIQMVSCD EVPMDADDEI GSGGGSRELS DELCRQSFDP LDFDADSDGV LHTDEMEAES
201: GFGKEVIMFD VADIQNYEQQ IPRTTDPRFY SLASEPQQFS IYCNNSNYVE EREGSCSVQV AAGAPDINLS CSSKVAAIDS TAEAEDKEDK DLQPSGKQRS
301: VRRRCLTFDM GGSHKRIPLR DSTNDLPLDS TSINKAPSPQ NCLDTSKQDT DEILPIPRTI GLHLNGFVNP SVSSGRKKKK IKDGQAFPST TFHYNIEDEF
401: STPVSTKRDL VVFSDVKIME PPERSVEGEC FDQLMAMENR QLSQGLDELG SCKRCKCRKS QCLKLYCECF SAGLFCGEPC SCQNCFNKPI HEDLVMKSRE
501: VIKARNPLAF APKVVSTSDT VIDLWVENSK TPASARHKRG CNCRKSGCSK KYCECFMMGV GCSSNCRCMG CKNTFGHTNE QCAGDSDVVT INDEAKHYGD
601: HGDASRQNEE ILTSERNRLL LPGSVAFRSL TSLSNLSEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)