AT3G04360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.670 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G04540.1); Has 385 Blast hits to 364 proteins in 38 species: Archae - 0; Bacteria - 22; Metazoa - 10; Fungi - 6; Plants - 333; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1157025..1158200 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41460.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.37 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||
| Length | 391 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRLKFACPV LEINLISAQD LAPVSRNMKT YSVAWINTDP MRKLTTRVDQ SNRANPIWNE KFVFRVNDKI LYVDASAIVI EIYAAAWAKD ALVGTVNVLL 101: SDLFAPWSGF GDGNDGGGGN NNMRLVTLQI RRPSGRLQGF LRLGVALLDG GQRSMPLSIE VFDGSRKGER NSVKRDQEAS RMMHRRTNSD QTDLTTSTND 201: YGVKTGVVTG NGGGGGGGGG IVVGADSMVN GSLCSSDIGP SASVVAAAIA QGLYNRQKTA VKAANKEDAS SILEGKTEGI EHRVERWRAE KNGTGGAGGA 301: AGSSDDSSGK GGAGRRRRRR RRKEKQQGRR NGGGEGKKGL FSCFGNVFGC EISITCGGGS GGEGDSTKKR YNNNKVVNLS AVDETFSHSA T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)