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AT2G46790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pseudo-response regulator 9
Curator
Summary (TAIR10)
Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.
Computational
Description (TAIR10)
pseudo-response regulator 9 (PRR9); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G46670.1); Has 67918 Blast hits to 66591 proteins in 3038 species: Archae - 212; Bacteria - 59069; Metazoa - 375; Fungi - 591; Plants - 3099; Viruses - 4; Other Eukaryotes - 4568 (source: NCBI BLink).
Protein Annotations
BioGrid:4627eggNOG:COG5641eggNOG:ENOG410JXJVEMBL:AB046953
EMBL:AC005310EMBL:AF272040EMBL:AY099676EMBL:AY128856
EMBL:CP002685EnsemblPlants:AT2G46790EnsemblPlants:AT2G46790.1entrez:819292
ExpressionAtlas:Q8L500GeneID:819292Genevisible:Q8L500GO:GO:0000160
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0007623GO:GO:0010017GO:GO:0045892hmmpanther:PTHR26402
hmmpanther:PTHR26402:SF569HOGENOM:HOG000034018InParanoid:Q8L500IntAct:Q8L500
InterPro:IPR001789InterPro:IPR010402InterPro:IPR011006KEGG:ath:AT2G46790
KO:K12128MINT:MINT-7908741OMA:DETCEDSPaxDb:Q8L500
Pfam:PF00072Pfam:PF06203Pfam:Q8L500Pfscan:PS50110
Pfscan:PS51017PhylomeDB:Q8L500PIR:T02680PRIDE:Q8L500
PRO:PR:Q8L500PROSITE:PS50110PROSITE:PS51017ProteinModelPortal:Q8L500
Proteomes:UP000006548RefSeq:NP_566085.1SMART:SM00448SMR:Q8L500
STRING:3702.AT2G46790.1SUPFAM:SSF52172TAIR:AT2G46790tair10-symbols:APRR9
tair10-symbols:PRR9tair10-symbols:TL1UniGene:At.1675UniGene:At.65052
UniProt:Q56XM1UniProt:Q8L500
Coordinates (TAIR10) chr2:+:19232874..19234901
Molecular Weight (calculated) 52567.90 Da
IEP (calculated) 7.77
GRAVY (calculated) -0.74
Length 468 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEIVVLSSD DGMETIKNRV KSSEVVQWEK YLPKTVLRVL LVESDYSTRQ IITALLRKCC YKVVAVSDGL AAWEVLKEKS HNIDLILTEL DLPSISGFAL
101: LALVMEHEAC KNIPVIMMSS QDSIKMVLKC MLRGAADYLI KPMRKNELKN LWQHVWRRLT LRDDPTAHAQ SLPASQHNLE DTDETCEDSR YHSDQGSGAQ
201: AINYNGHNKL MENGKSVDER DEFKETFDVT MDLIGGIDKR PDSIYKDKSR DECVGPELGL SLKRSCSVSF ENQDESKHQK LSLSDASAFS RFEESKSAEK
301: AVVALEESTS GEPKTPTESH EKLRKVTSDQ GSATTSSNQE NIGSSSVSFR NQVLQSTVTN QKQDSPIPVE SNREKAASKE VEAGSQSTNE GIAGQSSSTE
401: KPKEEESAKQ RWSRSQREAA LMKFRLKRKD RCFDKKVRYQ SRKKLAEQRP RVKGQFVRTV NSDASTKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)